ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_220752_346

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 411761..413872

Top 3 Functional Annotations

Value Algorithm Source
Cytochrome c biogenesis protein transmembrane region n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFG9_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 52.2
  • Coverage: 730.0
  • Bit_score: 738
  • Evalue 3.50e-210
Cytochrome c biogenesis protein transmembrane region {ECO:0000313|EMBL:EEF61333.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 52.2
  • Coverage: 730.0
  • Bit_score: 738
  • Evalue 4.90e-210
thiol-disulfide interchange protein DsbD-like protein similarity KEGG
DB: KEGG
  • Identity: 37.9
  • Coverage: 712.0
  • Bit_score: 452
  • Evalue 1.40e-124

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 2112
ATGCGTCCGCCTCTCGTCATTTTGATTTCGCTCCTCCTCTTCGCGGGGACGACTGTTCATGCCGCGCACACGCAGGCAAACCTGTTGCTGTCGGCCAATCCCGCCGCCCCGGGCAGCACCGTGCTGGCGGGCGTGGAATTAAAAATGGAACCGGGCTGGCATACTTACTGGAAAAATCCGGGCGCCGCCGGCGAAGTGACGGAGATCAAATGGCAGTTGCCCGCCGGGGTCACCGCCGGCGAGATTCAGTGGCCGTTGCCCGAAAAAATTCCGCCGCTCGACATCACCACTTACGGTTACGAGAACGACACCGTTTTGCTGGTGCCTTTGACGCTGGCCTCCAACCTGCCAGCCGGTCCGCTGGATCTCAAAGCCAAGGTCACGTGGCTTGAATGCAAAGAGTCCTGCATCCCCGCCGGCGCAGAAGTCGAAGCCACGTTAAGCGTCGGCCCGGAAGCCAATACAACCGCTGCGGCGGCGGTGTTGCAGGCGTGGCAGGAAAAAGTTCCAAAAGTGGCGGCCAATTTTTCGGGCCGGGCCTGGTGGGAAGGTCCGGCAACAGGCGATACGCGGATGCTGATTTTACAGTGGCCCGGCGACTCCCAAGGCGCCGACTTTTACCCGGCCGCGAATGACAATTTTGAAGTGCAAGGCGAAACACAGCCGCTCACCGGCCCCGCCGGCCAGATCCGCCTGCGCAAAGCCGTGAAAAAATATTCCGGCAACTGGCCCAGGGAAATTTTCGGCGTCTTTGTCGCCACCAACCGCGCGGTGGAAGCCCGGGTCAGCATCGCCGACGGCCCCTCCCCGACCGCCGCCGGCGGATCGGTGGCGGCGGCGACCGGCCCGGTCCCGGGAAAATCGCTCTGGCAGATGCTGCTTTACGCGTTCATTGGCGGCTTGATTTTGAACATCATGCCGTGCGTGCTGCCGGTCATCGCGTTGAAGATTCTCGGGTTCGTCAACGAAGCCAAAAGTTCTCCGCGCCGCGTGCGTCTGCTCGGCCTGGTTTACGCGGCCGGCGTTTGCGTTTCCTTCCTGGTGCTGGCGGGCGTCATCATCGGCGTCAAAGCCGCCGGCCACAAAGCCGGCTGGGGAATGCAGTTTGGCAGCCCGGTCTTCGTCGTTTGCCTCACCACCCTGGTCACGCTGGTGGCCATGAATCTCTTCGGCATTTTTGAAGTGACTTTGAGCGGTCGGGCGCTGGATGCCGCCGGCGGCCTTTCCGCCAAACCCGGCGTCGCCGGCGCGTTTTTCAACGGCGTGCTCGCCACAGCTCTGGCCACGCCCTGCACCGCGCCGTTTTTGAGCATCGCCCTGGGATTCGCGTTTGCCCAAAGCGCGATGATCATTCTGCTGGTGTTCCTGGCGGTGGCCATCGGCCTGGCCTCGCCGTATGTGGTTCTCAGTTGGCATCCCGGCTGGCTGAAGCTGCTGCCCAAGCCGGGAGCGTGGATGGAAAAGTTCAAAATGGCGATGGCGTTTCCGATGCTTCTGACCGTGGTCTGGCTGTTCAGCATCGCGGCGGGAAATTACGGTGACCGGGTGGTTTGGCTCGGCGTTTTTCTGGTGCTCATGGCGCTGGCGGCCTGGATCTTCGGCGAGTTTGTTCAGCGGGGCAACCGCCACCAGACGTTTGCCGTCATTCTAGCCGTCGCGGTGTTGGCGGCTGATTATACGTTTGTCCTCGAAGACCAGCTTGACTGGCGGCGGGCCGGATCACCGGCACAGGCAAACCCGGAAACCGTGGTTGAAGACGGCATTGCCTGGCAGCCGTGGAGCCCGGAGGCGGTGACGCTCGCGCGCGCCAGCGGACGCCCCATGCTCGTGGATTTCACCGCCGACTGGTGCCTGACGTGCCAGGTCAACAAGCGCACCAGCCTTGACGTTCCCTCCGTCCGCGAAAAACTCAAATCATTAAACGCCATCACCCTGCTCGCGGACTACACGCACTTCCCCGACAGCATCACCACGGAGCTGAACCACTTCAACCGGGCCGGGGTTCCCTTGGTGCTCGTTTATCCGAAGGAATCCGGCAAACCGCCGATCGTTTTGCCGGAGGTGCTGACGCCCGGCATCGTTCTTGCCGCGCTCGACGAGGCGGCTGATTGA
PROTEIN sequence
Length: 704
MRPPLVILISLLLFAGTTVHAAHTQANLLLSANPAAPGSTVLAGVELKMEPGWHTYWKNPGAAGEVTEIKWQLPAGVTAGEIQWPLPEKIPPLDITTYGYENDTVLLVPLTLASNLPAGPLDLKAKVTWLECKESCIPAGAEVEATLSVGPEANTTAAAAVLQAWQEKVPKVAANFSGRAWWEGPATGDTRMLILQWPGDSQGADFYPAANDNFEVQGETQPLTGPAGQIRLRKAVKKYSGNWPREIFGVFVATNRAVEARVSIADGPSPTAAGGSVAAATGPVPGKSLWQMLLYAFIGGLILNIMPCVLPVIALKILGFVNEAKSSPRRVRLLGLVYAAGVCVSFLVLAGVIIGVKAAGHKAGWGMQFGSPVFVVCLTTLVTLVAMNLFGIFEVTLSGRALDAAGGLSAKPGVAGAFFNGVLATALATPCTAPFLSIALGFAFAQSAMIILLVFLAVAIGLASPYVVLSWHPGWLKLLPKPGAWMEKFKMAMAFPMLLTVVWLFSIAAGNYGDRVVWLGVFLVLMALAAWIFGEFVQRGNRHQTFAVILAVAVLAADYTFVLEDQLDWRRAGSPAQANPETVVEDGIAWQPWSPEAVTLARASGRPMLVDFTADWCLTCQVNKRTSLDVPSVREKLKSLNAITLLADYTHFPDSITTELNHFNRAGVPLVLVYPKESGKPPIVLPEVLTPGIVLAALDEAAD*