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berkeley_reactor_200306_planktonic_scaffold_220752_348

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(414619..415443)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XDK1_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 49.7
  • Coverage: 286.0
  • Bit_score: 254
  • Evalue 1.00e-64
Pseudouridine synthase {ECO:0000313|EMBL:EEF62147.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 49.7
  • Coverage: 286.0
  • Bit_score: 254
  • Evalue 1.40e-64
RNA pseudouridine synthase similarity KEGG
DB: KEGG
  • Identity: 38.0
  • Coverage: 255.0
  • Bit_score: 151
  • Evalue 2.60e-34

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 825
ATGGCGAAACCCAATTTCATCGAGCTGCCGGGCTGCGACCCGATTCCCATCATTTACGAAGACCGGTCGGTGCTGGCGATTGACAAGCCGCGCGGCTGGATGCTGGTGCCGCATTCCTGGCGGAAGACGAATTGGAATCTGCAGGCGGCGATTGATTCCTCCATCCGCGCCGATGATTTTTGGGCGAAGTCGCGCAACCTGACCTACCTGCGCCATATTCACCGGCTGGACGCGGACACCAGCGGCGTGATGTTGTTTGCCAAAAGCGACGGCGCCATGAAAGCCATGAGCGACATGTTTGAATCGCGGCGCATGGAGAAAACCTACCTGGCGGTGGTCGAGAAAAATCCGCCGCAGCCGGAATGGACTTGTGAACTGCCCCTCGGCCCGGATCCAACCCGGTTCGGACGGATGAGCGTGGATCGTTCAGAAACCGGCAAGGAAGCGGTAACGCACTTTCGCGTGCTGACGCGCAACGGTCGGTTCACCTTGATCGAAGCCAGGCCGCTGACCGGACGCACCCACCAAATCCGCCTGCACCTGGCGGAATCCGGATCGCCCATTGCCTGCGATGAGCTTTATGGCCGGGTGGAGAAAGGGCTTCGCCTGGGCTTGCGCGCGGTGCGGCTGGCTTACAAAGACACCTTCACGCGGCGTCCCGTGGACATCATCGCGCCAGCGGAACCTTTTCTGAAGGCGTTCGGGTTTGAACTGACGCCGGAACTGGCGGCGCAAAAATGGGCGACGCCGCCCCGTCGTCCATTCAAAGAAAAAAAGCCGGATAAGAAACCGGACACGCCGCCGCGCCCGGTTCGTCCCGAATAG
PROTEIN sequence
Length: 275
MAKPNFIELPGCDPIPIIYEDRSVLAIDKPRGWMLVPHSWRKTNWNLQAAIDSSIRADDFWAKSRNLTYLRHIHRLDADTSGVMLFAKSDGAMKAMSDMFESRRMEKTYLAVVEKNPPQPEWTCELPLGPDPTRFGRMSVDRSETGKEAVTHFRVLTRNGRFTLIEARPLTGRTHQIRLHLAESGSPIACDELYGRVEKGLRLGLRAVRLAYKDTFTRRPVDIIAPAEPFLKAFGFELTPELAAQKWATPPRRPFKEKKPDKKPDTPPRPVRPE*