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berkeley_reactor_200306_planktonic_scaffold_220752_356

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(428718..430505)

Top 3 Functional Annotations

Value Algorithm Source
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.5
  • Coverage: 587.0
  • Bit_score: 990
  • Evalue 8.00e-286
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS08_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 82.5
  • Coverage: 587.0
  • Bit_score: 990
  • Evalue 5.70e-286
gcpE; 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase similarity KEGG
DB: KEGG
  • Identity: 58.3
  • Coverage: 587.0
  • Bit_score: 649
  • Evalue 6.70e-184

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1788
ATGCGCTACTGCGAATCTCCCTACGTTTTCCACCGCCGCAAATCCCGTGAAATCATCGTCGGCGATCCCGCCCACGGCGGTGTCGTCACCGGTGGGGATCATCCGGTCGTGGTGCAATCCATGCTGACCTGCGACACCATGGATACCGCCGCCTGCGTGCAGCAGACGCTGGATTTGGTCAAGGTTGGCTGCCAGATCGTCCGCATCACGGCGCCGACGGTGAAGGACGCCGCGAACCTGCAAAACATCGTGGCCGAACTGCGCCGGCGGGGCGTGCAGGTGCCGATCGTCGCCGACATCCACTTCAAACCCGAGGCGGCGATGGAAGCCGTCAAGTGGGTGGAGGTGGTTCGCGTCAACCCCGGCAACTACGCCGATTCCAAAAAATTCGCCATCAAGGAATACACCGATGACCAATACGCCGAGGAATTGAGGCGCATCGAGGAAAAATTCACGCCGCTCGTTCTGGAATGCAAGCGGCTCAAGCGCGCCATGCGCATCGGCACCAACCACGGTTCCCTGAGCGACCGCATCATGAACCGCTACGGCGACACGCCGCTGGGCATGGTGGAGAGCGCGCTGGAATTCGCCCGCATCTGCCGCAAGCACGATTTTCATAACTTCAAATTTTCGATGAAGTCGTCCAACCCCAAGGTGATGATTGAATGTTATCGCCTGCTGGTGGCGCGCTTGGAGCAGGAAGGGGCGGACTGGAATTATCCGCTGCATCTGGGCGTCACCGAGGCGGGCGAAGGCGAGGACGGCCGCATCAAATCCGCCATCGGCATCGGTTCCCTGCTGTGCGACGGCCTGGGCGACACCATTCGCGTGTCGTTGACGGAAGATTCGCCGCACGAAATTCCGGTGTGCCGCGATCTGCTTGCATTGGTGCCCAAACTGGCCAACACCTCGGTGCCGGTCGCCGAAACGCAGCCGCCGTTCGATCCGTTTCACTTTGAAAAGCGCGAGACGCCGGAGATTGCGTTGAACGACGTGGTCAAATGCGGCGGCGAACAACTCATTCGCGTGGTGGTCACGCGGGCCACTTATGACAAAGTCGCCCCCAAAATTCGACCCAAGGACGACGTCAAGCCGGAGGCCGTTTACGAGGATTTGAACGTCGCGGAAATTGATCCCACGCAGGATTTTGAAATCAATTGCGACACCCAGCTCGTTACGGTGAAGGATGGCGTGAATCTTCCGGCCATCACCGCTTTTCGCCTGCTGGCCGCCAAACTCAAGCAGCTGGGCCGGCGCAACCCGATTTTGCTGAAGGACTGCCTTCGCTTCGAGCCGGTGCCGCTGGCGCCCAACCTCGCGCTGTTGCAGGCCGGCGTGGTGATCGGGTCGTTGCTGGCCGACGGCATCGGCGACGCGATTTTGATTCGCGGCGAGAGCGGGGCGGGGCAGTCGCTCCGGCTCGCTTACAACATTTTGCAGGCGGCCGGCTGTCGCAGCTTTAAAACCGATTACGTGGCGTGTCCGAGCTGCGGCCGCACCTTGTTCAACCTGCAAACCGTGACGGCGCGCATCAAAGCCCGCACGGAGCATTTGAAAGGCGTGAAAATCGCCATCATGGGCTGCATCGTGAATGGTCCGGGCGAAATGGCAGACGCGGATTTTGGCTACGTTGGTGGCGCGCCGGGCAAAATCAATCTCTACGTGGGCAAACAGCCGATCAAGTTCAACATTCCCGAAGCGGAAGCGGTGGACCGATTGGTGGATCTCATCAAGGAGCACAACAAATGGGTCGAGCCGGAAGCCATCGAGGCGGAAGCGGCTCAGTGA
PROTEIN sequence
Length: 596
MRYCESPYVFHRRKSREIIVGDPAHGGVVTGGDHPVVVQSMLTCDTMDTAACVQQTLDLVKVGCQIVRITAPTVKDAANLQNIVAELRRRGVQVPIVADIHFKPEAAMEAVKWVEVVRVNPGNYADSKKFAIKEYTDDQYAEELRRIEEKFTPLVLECKRLKRAMRIGTNHGSLSDRIMNRYGDTPLGMVESALEFARICRKHDFHNFKFSMKSSNPKVMIECYRLLVARLEQEGADWNYPLHLGVTEAGEGEDGRIKSAIGIGSLLCDGLGDTIRVSLTEDSPHEIPVCRDLLALVPKLANTSVPVAETQPPFDPFHFEKRETPEIALNDVVKCGGEQLIRVVVTRATYDKVAPKIRPKDDVKPEAVYEDLNVAEIDPTQDFEINCDTQLVTVKDGVNLPAITAFRLLAAKLKQLGRRNPILLKDCLRFEPVPLAPNLALLQAGVVIGSLLADGIGDAILIRGESGAGQSLRLAYNILQAAGCRSFKTDYVACPSCGRTLFNLQTVTARIKARTEHLKGVKIAIMGCIVNGPGEMADADFGYVGGAPGKINLYVGKQPIKFNIPEAEAVDRLVDLIKEHNKWVEPEAIEAEAAQ*