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berkeley_reactor_200306_planktonic_scaffold_235821_4

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 1458..6515

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
Outer membrane transport barrel n=2 Tax=Pseudomonas fluorescens RepID=I4K362_PSEFL similarity UNIREF
DB: UNIREF100
  • Identity: 27.4
  • Coverage: 1848.0
  • Bit_score: 345
  • Evalue 2.70e-91
Outer membrane transport barrel {ECO:0000313|EMBL:EIK59152.1}; TaxID=1038924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens SS101.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 27.4
  • Coverage: 1848.0
  • Bit_score: 345
  • Evalue 3.80e-91
outer membrane autotransporter barrel similarity KEGG
DB: KEGG
  • Identity: 28.2
  • Coverage: 1810.0
  • Bit_score: 342
  • Evalue 3.80e-91

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Taxonomy

Pseudomonas fluorescens → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 5058
ATGAAAAACACCGACAAAAAATCCATCGGTCTCAAAATGACGGCCGGCATTGCTGCCGCTGTCCTCTGCTTGTCAGCCGCGCCGTCCGCCCGGGCGCAGGCTTCGTGGACGGGCGGTGCCAGTCCCGATCTGAACTGGTCCACCGGCGGCAACTGGAGCGGCGGCACGGGCGGCGGCGGGGAGCCGGGCGCGAGCGACGCCGTGATTTTTGGCGAGACGGGCGTCGTCGCCGATCCGGCCACGGTGAACAACATCGTTGACCTGAGTTTTGGCGGTATGATTGCCTCGCTGGCTTACAACCAGGCCAATTCCGGTGAATATCACGTCACCGACATTCCGGACGGACAGACATTGAATGTGACCGGTGACACGACGGTGGGCGGTTTGAATGCCGACAACAGCATCACCGAGGTGACCCTGACCGGCGGCGGCACGTTCGCCCCCGCCGGGACGTCGTTCCATGTGGGGAATCGCGGTTCCTCCTCCACCTCGTCGTTGCACGCCACGCTGGACATGTCCAGCCTGAGCAATTTTGTTTACAACGTTCCGGGCGGAACGTGGGTGGTGGCCGGGAGCGGCGGTGATGCGCGGGCCGGCGGCGTGCTCAACTTTGCCGGAGGGAGCAACGACGTAACCGTGGGCACGATCAATTTCAACACGGGCAGCGGCAACAACAGCGGTTTCCACAGTCTGATTCAATTCGGCGGCGGCACCAACATCCTGAATGTGGGGACATTCAACATCTGCCAGACCAAGGCCCGGTTTGCCGACGTTCAATTCATCAGCACGGCGCCGGCGACGGCGGGGCTGCGTCTGCGCGGCGTGAACGGGGACACGGACGACACCTCGCGGGCGAACATCACTTTGGGGGATCGCAACAACAGCGGCAGCTCGGATACCATTGGCCGGCTGTTGCTCAACGGGCACCCGGTGGACATCAAGGCGGATACGTTGATCGTCGGCCAGGACCGGACGGGCAGCGGAACCTCCACCCGTTCGGGGCAGGGCGTGCTCCAGTTTGATACCGGCACGGTGGATGCCAACACGGTTCTCATGGCCAATCTCAGCGGGAGCACGGCTTCCTCCACGGCCCTGGGCACCATCACCGTCGGCGCCAACGGCACGCTGCTGGTTGGGACGGGCGGCCTTTCGCTGGTCCGGCAAAACGCCGGAACGGCCAGTGGCACGCTGGAAGTGGACGGCGGCAGCGTGGTGTCCAGCGGTGACATTTTTAAGGCCACCTCGGCGGGCACGGGCAGCATTACCGTGAATGCCGGTTCGCTGAACGCCGGGGGAAAGCTCGGCGGGGCGGACGCACCGATTGACAGCCTGGACGTTTCGGATGCGACCCTGACGCTCACCGTTGGTGCCAGTGCGAACGCGCATGTCACAACGCTGACGTGCGATGGCACCACGAATGTCATCAACATTGCCAATGTCCCGGTCGTCACCGGGTATCCGGCCGAGTTTCCGTTGATTGCCTATGCCGGAACCCTTGGCGGCACCTTCAATTTCGGCGCGGGAACCTTTCCGACCTCCAGTCCGGCTTTTACCGGTTACATTACAAACAACACGACGGACAACACCATTGACCTGGTGGTGACCGGCGGACCGGCTCCGGCGCGGGTGTTGTCCTGGGACGGCGTTCCCACTGGCGACTGGGATACGACCACCGCCAACTGGAAGTATTCGGGTTCCAGCACGACCTACAGTCCCGGCGACTTTACGCGTTTCGATGACAGCGCGTCGGGCACCACGGCGGTGAATTTGACCGGGACGATGACGCCGAGCGGCATCACCGTAAGCAATGAAACCAAGGCCTACGGATTTGGCGGCGCGGGCTACATCAGCGGCGACACCAGCATCATCAAGCAAGGTGCCGGCACGCTGTATATCACCAATTACTCCGTGAACGATTATACCGGCGTCCTCAACATTGAGGCCGGCGCGGTGCAGGTTGGCGACGGCAGCTACGCGGGGAATCTGAGCGGCGGTGACGTGATAGACAATGGATCGCTTGTGCTCAATCGCGCGGATGCCGTCACCTGGCCCAACACCATTTCCGGCAGCGGCTCCGTTTCCAAGCTTGGCACCGGATCGTTGGAACTTTCCGGCGGAAACAGCTACGACGGCGCGACGATCGTGCAGGCCGGAACGTTGAAGACTTCCAGCGGGAGCGCACTGGGCTCAACGGTCGGGGCGACAACGATAAACAGCGGGGCGACTTTGGACGTTAATGGCAGCATTCTTGGGGCCGAAGTGGTGAACATTTCCGGGCCGGGCGATGGCAGCGGCGCCATTGTCAACAGCGGGGCGGATCAGATTCACGCCCTGCAAAACGTCAATCTCCTGAGCGATGCCACCATTGGCGGAGCCGGCCGTTGGGACATCCGCAGCCCCAATTCCCATGATCCCACCCAGGCCAGCCTGGGCACCGGCGGCCAGCCCTTCAACCTGACCAAGACGGGTTACAATCAGATCAGCCTGGTGGCCGCCGCGGTGGATCCCAAGCTGGCGAACGTGGATGTGCAGCAGGGCACGCTGGGCATCGAAACCGAGACGACGGGGCTCGGGGATCCGGCGGCCACGCTGACCGTGGAGGCGGGGGCGACACTGGAACTGTATCAGATCACCAACCAGCTTGATAAGGTTATCCAGCTCAACAGCGATGGAGTTACGGATACCATTCTCAATAATTCCGGAGCCAACACGATCGTCGGCCCGATGACGCTGATGAACGATTGTTACTTTAACGTGGGCGGCACCTCGCTGGCATTGAACGGCTTGGTCGCCGGCGGTGGCAACATCATCAAAGGCGGCGATGGAAATCTCATCATTGGGGGCACGGCCACGGAGGCCGGTATTACGGCGAATTCCGGGCAGGTGACCTTGAATGGCACGCATACCGGGCCCATTATGTGCAACAATTTTCTGTTGCCGACGATTTTTGCCGGCACCGGCACCAATTACGGCGGCGTGGATATTGCCGGGCAGCTTTTCCCGGGTGACACCAATGCGGTGGGAACGATCACCACCGGCAACCTGACGCTTGAATCCGGCGCGACCGTCGGCTTCGATCTGGGGGCGAACAATGGAGTGGGCGGAACCAATAATGACCTGATTCAAGTGAACGGCGACCTGACGATCAATGGCAACGCGGTGAAGATCAATCCGATGGGTGTTCTTCAGCTTGGTGTTCCGTATCGTTTTGCCAACTATACCGGCGCGTTGAACGTGTATGGCGATCTCACGGTCGCCGGCCCCAACGGTCAATACGTTTTCACGGTGGATACCAGCACGCCCGGCCAGGTCAACCTCATCGCCGCAGGCGGTCCGCCCGTCTGGAACGGCGGCAGCGCATCGAACAACAATTGGTCCGATGCGAGCAACTGGAGCGGCGTGGCGCTCAACCCCGGCAACTCAATGATTTTCGCCGGCAAAACCCGGCTGAACAACACGAACGACACGCCCGATGACACCAGCTACAACGGCGTGACCTTTGACGCCACCGCCGGCGCCTTTGTCCTGAACGGCAACATCGTCGCGCTGACGGGTAACATCGTCAACAACTCCACCAACCCGGAAACGGTGAACCTGCCGCTGGATGTCAGTGGCAACGCGAGCTTCAACGGCGGCATTGGAAAACTGGTCGTGGGCGGACTGACGAACAGCACCGGGCTGGCGTCGCTGACGCTGGCCGGCAATGGCACGCTGGCCAACAACCTGGCGACGCAATCAACCGGCTGGACCAACATCCTCAATACCACCAACGCCAACTGGACGCTTTTGGACAACGCCTCGTCCACCGCCATCACCAATCCGGTGGGGTTCGATTTCCAGGCCGGCACGTTTACTTTTGGCCAGACCAACAGCTCGCCCGTGCTGGTCAGCACCAAGTCGGACTTCAACCTGCGGCTGGGTGTTCTCGGCGGCCAGCCGGCCACGTTTAACATGATGAACGGAACCTTCATCATCCCGGCGCGCTTTAACATGGGCGAAGCCGACGGCGCCATTTCCACTCTCAACCAGAGCGGTGGCACCATCAACGCCACCTTGTTCCAGGCCGCCGACGGCAACGCCACCGCCGTCTCGACCATCAATGTCAGCGGCGGTCTGCTGGATATTGGCACGCAGGCATTCTTCCTGTGCAGCCGCGGCACGGGCACCTTGACCGTCAGCGGCACAGGCCAGATCGTATGCGGCACCCTGGATGTTTCCCGCAACGCCTCCAGCGCCGGTTCCACCGGCGTGGTGAATCTTGATGGCGGCACGCTCACCGTCAATCGTGTGTCCGCCGGCACGAGCGCGACCGGTTCGGGCGGCACGCCCACGGCCACTTTCAACTTCAACGGCGGCACGCTCACGGCGGGCGCCAGTTCTTCCACGTGGTTTCTGGGGCACGCATCGTCGCCGGCCATACCGGTTAATGCCTTTGTGAAGTCCGGCGGCGCCGTCATTGACACGGCGGGTTTCAACGTGAGCGTAATGGAACCGCTGCAACACGACAGCGCCCTCGGCGGCACGCCCGACGGCGGCTTGACCAAACTGGGCGATGGCACGCTGACCCTGGGCAAAGCCGGCACTTACACGGGCGACACGGTGGTCAAAGGCGGCACGCTGGAAATCGCCCTGGCCACGCTGGCGACCAATTCAACGGTGTCCGTGACCAACGGCGCCCTGTTGCAGTTGGATTTCACGGAGACGAATCAAGTCGCGGCGCTGGTGCTCGATGGTGTCAGCCAGCCTGCCGGCATTTACAATGCCGCGACCAGCCCCGGTTTCATTTCCGGTGCGGGCAGCCTGGTGGTGGGGGCGGGCCCCGCGCCGCAGTTGACCATCACCGGCTTCAGCGTGTCGGGAACCACGCTCAACCTCTCGGCCATGAACGGCACGGCGAACGGACAATTCATTCTCCTGGGCACGACTAATGTGGCGTTGCCGTTGTCGGCATGGACGCCGGTGTTGACGAACACCTTCGACAACAGCGGTTCATTGGATCTCTCCACGAACATTGTGGATCCCAACATTCCGCAGCAGTTTTACATCATCGTGGAATAA
PROTEIN sequence
Length: 1686
MKNTDKKSIGLKMTAGIAAAVLCLSAAPSARAQASWTGGASPDLNWSTGGNWSGGTGGGGEPGASDAVIFGETGVVADPATVNNIVDLSFGGMIASLAYNQANSGEYHVTDIPDGQTLNVTGDTTVGGLNADNSITEVTLTGGGTFAPAGTSFHVGNRGSSSTSSLHATLDMSSLSNFVYNVPGGTWVVAGSGGDARAGGVLNFAGGSNDVTVGTINFNTGSGNNSGFHSLIQFGGGTNILNVGTFNICQTKARFADVQFISTAPATAGLRLRGVNGDTDDTSRANITLGDRNNSGSSDTIGRLLLNGHPVDIKADTLIVGQDRTGSGTSTRSGQGVLQFDTGTVDANTVLMANLSGSTASSTALGTITVGANGTLLVGTGGLSLVRQNAGTASGTLEVDGGSVVSSGDIFKATSAGTGSITVNAGSLNAGGKLGGADAPIDSLDVSDATLTLTVGASANAHVTTLTCDGTTNVINIANVPVVTGYPAEFPLIAYAGTLGGTFNFGAGTFPTSSPAFTGYITNNTTDNTIDLVVTGGPAPARVLSWDGVPTGDWDTTTANWKYSGSSTTYSPGDFTRFDDSASGTTAVNLTGTMTPSGITVSNETKAYGFGGAGYISGDTSIIKQGAGTLYITNYSVNDYTGVLNIEAGAVQVGDGSYAGNLSGGDVIDNGSLVLNRADAVTWPNTISGSGSVSKLGTGSLELSGGNSYDGATIVQAGTLKTSSGSALGSTVGATTINSGATLDVNGSILGAEVVNISGPGDGSGAIVNSGADQIHALQNVNLLSDATIGGAGRWDIRSPNSHDPTQASLGTGGQPFNLTKTGYNQISLVAAAVDPKLANVDVQQGTLGIETETTGLGDPAATLTVEAGATLELYQITNQLDKVIQLNSDGVTDTILNNSGANTIVGPMTLMNDCYFNVGGTSLALNGLVAGGGNIIKGGDGNLIIGGTATEAGITANSGQVTLNGTHTGPIMCNNFLLPTIFAGTGTNYGGVDIAGQLFPGDTNAVGTITTGNLTLESGATVGFDLGANNGVGGTNNDLIQVNGDLTINGNAVKINPMGVLQLGVPYRFANYTGALNVYGDLTVAGPNGQYVFTVDTSTPGQVNLIAAGGPPVWNGGSASNNNWSDASNWSGVALNPGNSMIFAGKTRLNNTNDTPDDTSYNGVTFDATAGAFVLNGNIVALTGNIVNNSTNPETVNLPLDVSGNASFNGGIGKLVVGGLTNSTGLASLTLAGNGTLANNLATQSTGWTNILNTTNANWTLLDNASSTAITNPVGFDFQAGTFTFGQTNSSPVLVSTKSDFNLRLGVLGGQPATFNMMNGTFIIPARFNMGEADGAISTLNQSGGTINATLFQAADGNATAVSTINVSGGLLDIGTQAFFLCSRGTGTLTVSGTGQIVCGTLDVSRNASSAGSTGVVNLDGGTLTVNRVSAGTSATGSGGTPTATFNFNGGTLTAGASSSTWFLGHASSPAIPVNAFVKSGGAVIDTAGFNVSVMEPLQHDSALGGTPDGGLTKLGDGTLTLGKAGTYTGDTVVKGGTLEIALATLATNSTVSVTNGALLQLDFTETNQVAALVLDGVSQPAGIYNAATSPGFISGAGSLVVGAGPAPQLTITGFSVSGTTLNLSAMNGTANGQFILLGTTNVALPLSAWTPVLTNTFDNSGSLDLSTNIVDPNIPQQFYIIVE*