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berkeley_reactor_200306_planktonic_scaffold_44244_54

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: 51882..53321

Top 3 Functional Annotations

Value Algorithm Source
RND efflux system, outer membrane lipoprotein, NodT family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PTN5_CHIPD similarity UNIREF
DB: UNIREF100
  • Identity: 72.1
  • Coverage: 477.0
  • Bit_score: 699
  • Evalue 1.20e-198
NodT family RND efflux system outer membrane lipoprotein similarity KEGG
DB: KEGG
  • Identity: 72.1
  • Coverage: 477.0
  • Bit_score: 699
  • Evalue 3.50e-199
RND efflux system, outer membrane lipoprotein, NodT family {ECO:0000313|EMBL:ACU62792.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.1
  • Coverage: 477.0
  • Bit_score: 699
  • Evalue 1.70e-198

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Taxonomy

Chitinophaga pinensis → Chitinophaga → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1440
ATGATGATGTATAAACATAAAATCGGCCGGAGCCTGGCCCTGCTGGGCTTTTGCCTGTATGCTGCCGGCTGTAAGGTGCCTGCCATTGTACAGACGGCCACGCACGATACCCTGCCATCGGCCTTCCGGGGCAGTACCGATACAACCACGCTGGCTGCTGTGCCCTGGCGTAGTTTTTTTACCGATAAGCATTTGTCCGACCTGATCGATACGGCGCTTAATAATAACCAGGAGCTCATGATCACCTTGCAGGAGATCGAGATCGCCCGTAACGAAATCCGGTCGCGTAAGGCGGCACTGTTGCCCACTGTAGGATTCAGGGCTGGTGCGGGTTTTGAAAAGGTAGGCCGCTATACCAGCCAGGGCGCCGGCGATGCTTCAACTGAAATTACCCCGGGTAGGGAAATGCCCGAAGTATTGCCCGATTACCTGGTAGCCTTACAGGCCAATTGGGAAATCGATATCTGGAAAAAGCTGCGCAATGCAAAAAAAGCGGCTGTTACCCGTTACCTGGCAACAGTAGAGGGTAAGAACTTTGTATTGACCAACCTGATTGCCGAGGTAGCCAATACCTATTATGAATTAGTGGCGCTCGACAACCAGTTGGCTATAGTGCGCCAGAATATAGACCTGCAAAAGAATGCGCTCGAGGTGATCCGCGTACAGAAGGAAGCGGCGAGGACCACCGAGCTGGCGGTCAAAAAGTTTGAAGCAGAAGTGTTGGGTTCGCGTAGTCTCGAATTCGATATCCTGCAACAGATCAAAGAAGCAGAGAATCGCTTGCACCTGTTGCTGGGCCGTTATCCCCGCGAGATACCCCGCGAAAAAGGCAACCTGCAGGACCTGGTACCACCCGTAGTGCGTGCCGGTATCCCGGCGCAGTTGCTGGCCAACCGCCCGGACATCAAACAGGCCGAGCTCGAGCTCACCGCAGCCAAGTTAGATGTAAAGGTGGCCAGGGCCGAGTTCTTCCCTTCGCTGGGTATATCGGGTAGCCTGGGTTTCCAGGCCTTTAATCCTTCTTATCTCTTCCGTTTGCCCGAGTCCTTGCTGGGCTCGCTGATGGGCGATCTTGCCGGACCGCTGATCAACCGTAATGCTATCAGGGCCGAGTTCAATAATGCCAGCGCCAAACAGGTGCAGGCTTTATACAATTATGAAAAGACCGTTTTGAATGCCTATCTCGAAGTAGCTACCCAGCTTTCCCGGATTGATAACCTGGGGCAGAGTTACGAGCTGAAAACCCAGCAGGTAGCGGCTTTGACGCGTTCTATAGAGGTGTCTAACGATCTCTTTAAATCGGCCCGTGCCGATTATCTCGAAGTATTAATGACCCAGAGAGATGCCCTGGAAACCCGGTTGGAGTTGGTAGAAACCCAGAAGAACCGGTTGAATGCCGTGGTTAATATTTACAAACAATTAGGTGGCGGTTGGCGATAA
PROTEIN sequence
Length: 480
MMMYKHKIGRSLALLGFCLYAAGCKVPAIVQTATHDTLPSAFRGSTDTTTLAAVPWRSFFTDKHLSDLIDTALNNNQELMITLQEIEIARNEIRSRKAALLPTVGFRAGAGFEKVGRYTSQGAGDASTEITPGREMPEVLPDYLVALQANWEIDIWKKLRNAKKAAVTRYLATVEGKNFVLTNLIAEVANTYYELVALDNQLAIVRQNIDLQKNALEVIRVQKEAARTTELAVKKFEAEVLGSRSLEFDILQQIKEAENRLHLLLGRYPREIPREKGNLQDLVPPVVRAGIPAQLLANRPDIKQAELELTAAKLDVKVARAEFFPSLGISGSLGFQAFNPSYLFRLPESLLGSLMGDLAGPLINRNAIRAEFNNASAKQVQALYNYEKTVLNAYLEVATQLSRIDNLGQSYELKTQQVAALTRSIEVSNDLFKSARADYLEVLMTQRDALETRLELVETQKNRLNAVVNIYKQLGGGWR*