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scn_reactorb_scaffold_5260_14

Organism: 2019_SCN_bioreactor_inoc_reactorb_Clostridiales_33_7

near complete RP 39 / 55 MC: 1 BSCG 45 / 51 MC: 3 ASCG 12 / 38 MC: 3
Location: comp(10125..10826)

Top 3 Functional Annotations

Value Algorithm Source
Two component transcriptional regulator, winged helix family protein n=1 Tax=Gardnerella vaginalis 284V RepID=I4LAZ8_GARVA similarity UNIREF
DB: UNIREF100
  • Identity: 68.0
  • Coverage: 228.0
  • Bit_score: 322
  • Evalue 3.40e-85
Two component transcriptional regulator, winged helix family protein {ECO:0000313|EMBL:EIK74138.1}; TaxID=698950 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Gardnerella.;" source="Gardnerella vaginalis 284V.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.0
  • Coverage: 228.0
  • Bit_score: 322
  • Evalue 4.80e-85
putative OmpR family two-component response regulator similarity KEGG
DB: KEGG
  • Identity: 67.9
  • Coverage: 218.0
  • Bit_score: 318
  • Evalue 1.40e-84

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Taxonomy

Gardnerella vaginalis → Gardnerella → Bifidobacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 702
ATGGACTATCTAAAAGAAAAAAAGATAATGCTCGTAGACGACGAGCCAGAAATAATTAAAATGGTAGTATCAATATTAAATGACGATGATTTTACAAATATCATTACTTCGGTGTCATATAGTGAAGCAATACGAAGTTTTGAAACAACGCAACCGGATATAGCCGTTCTCGATGTTATGCTGCCGGACGGTGACGGACTTCAACTTGCAGAGAGAATTCGTGAAAAGTCGGATATTCCAATTATCTTTCTTACTGCAAAAGGTGAAGCAGAAGATAGATTTAGCGGTCTGCAATTAGGAGCAGATGATTATATCGTAAAACCCTTTTTTCCGCAGGAATTGGTTTTGCGTATAAATGCTATATTGAAAAGGTGCTATAAAGAAGAAAACCCTGTCTTGAAGCTTTCTGGGTGTACAGTAGATTTCAGTAGAGCTGAGGTAATAAAAGAAAATGATGTTTATCCTCTCACTGCAAAGGAACATAGCATTTTGGAAACACTATACCGTAATGCAGGCAGGATTGTAACGATTGATGCCCTATGTGAAGCGGCATGGGGAGATAATCCTTTTGGTTATGAAAATTCCCTTATGGCACACATCAGGAGAATACGAGAAAAAATTGAACTTAACCCATCAAAACCTGTTTCATTATTGACGGTAAAAGGATTGGGCTATAAGCTCGTCATTCCGAATATGAGGTAA
PROTEIN sequence
Length: 234
MDYLKEKKIMLVDDEPEIIKMVVSILNDDDFTNIITSVSYSEAIRSFETTQPDIAVLDVMLPDGDGLQLAERIREKSDIPIIFLTAKGEAEDRFSGLQLGADDYIVKPFFPQELVLRINAILKRCYKEENPVLKLSGCTVDFSRAEVIKENDVYPLTAKEHSILETLYRNAGRIVTIDALCEAAWGDNPFGYENSLMAHIRRIREKIELNPSKPVSLLTVKGLGYKLVIPNMR*