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scn_reactorb_scaffold_54119_1

Organism: 2019_SCN_bioreactor_inoc_reactorb_Clostridiales_33_7

near complete RP 39 / 55 MC: 1 BSCG 45 / 51 MC: 3 ASCG 12 / 38 MC: 3
Location: comp(3..260)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Dehalobacter sp. E1 RepID=UPI0002D517B3 similarity UNIREF
DB: UNIREF100
  • Identity: 61.0
  • Coverage: 82.0
  • Bit_score: 104
  • Evalue 4.10e-20
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1212545 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus arlettae CVD059.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 38.7
  • Coverage: 75.0
  • Bit_score: 61
  • Evalue 4.30e-07
rpoD2; RNA polymerase sigma factor RpoD similarity KEGG
DB: KEGG
  • Identity: 39.2
  • Coverage: 74.0
  • Bit_score: 58
  • Evalue 7.30e-07

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Taxonomy

Staphylococcus arlettae → Staphylococcus → Bacillales → Bacilli → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 258
GTGAAAGAGAATGATGTAATTAACGAGTCATCAATGAGTGTGGATGAAAAAAAGCAATTAGAAAATGCAGCAAAAATTGAAAGCATCAAAACCAGTTTGATTGAGAAGGGAAAAAAGAATGGTTTTATTTCCTATAAGGAAATAGTGAAATCCTTCGAGAAAATGGAAATCAACCCTGAGTTTATTGATGATTTCTACAAGGTCGTAGAAGAGAATGACATTGAAATTTTAGGTCTCCAAGATGATATGCTTGAAAAA
PROTEIN sequence
Length: 86
VKENDVINESSMSVDEKKQLENAAKIESIKTSLIEKGKKNGFISYKEIVKSFEKMEINPEFIDDFYKVVEENDIEILGLQDDMLEK