ggKbase home page

scn_reactorb_scaffold_48960_6

Organism: 2019_SCN_bioreactor_inoc_reactorb_Clostridiales_33_7

near complete RP 39 / 55 MC: 1 BSCG 45 / 51 MC: 3 ASCG 12 / 38 MC: 3
Location: comp(4643..5095)

Top 3 Functional Annotations

Value Algorithm Source
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=944565 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Parvimonas.;" source="Parvimonas sp. oral taxon 393 str. F0440.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.9
  • Coverage: 151.0
  • Bit_score: 195
  • Evalue 3.30e-47
Peptide deformylase n=1 Tax=Parvimonas sp. oral taxon 110 str. F0139 RepID=F5TC67_9FIRM similarity UNIREF
DB: UNIREF100
  • Identity: 62.9
  • Coverage: 151.0
  • Bit_score: 195
  • Evalue 2.40e-47
peptide deformylase similarity KEGG
DB: KEGG
  • Identity: 61.6
  • Coverage: 151.0
  • Bit_score: 191
  • Evalue 1.60e-46

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Parvimonas sp. oral taxon 393 → Parvimonas → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 453
ATGGCATTAAGAAATGTAAGAATAGATGGAGACGAAATATTAAGAAAGAAAAGCAGAGAGGTAGAGAAGATAGATGAGAAAGTATTAATACTTCTCGACGACATGGTAGACACTATGTATGAAAAGGACGGGATAGGTCTTGCTGCTCCACAGGTAGGAGTTTTAAAGAGACTTGTAGTTATACATGTAGATGATGAAAATTTATATAAAATGATTAATCCAAAGATTACAAAATCAAGCGGAGAGGCTATAGATGCAGAAGGTTGCTTGAGTGTCCCAGATAGAAGAGGAGAAGTGTCAAGACCAACAAATGTAACTGTTGAATACACTGATGCAGACGGCAATTTGCAGACAATGGATACAGAGGGATTGTTAGCAAGATGTGTATGTCACGAAATAGACCATCTTGACGGAATACTTTATACAGATAAAATGATTAGGGAAGTGGAGTAA
PROTEIN sequence
Length: 151
MALRNVRIDGDEILRKKSREVEKIDEKVLILLDDMVDTMYEKDGIGLAAPQVGVLKRLVVIHVDDENLYKMINPKITKSSGEAIDAEGCLSVPDRRGEVSRPTNVTVEYTDADGNLQTMDTEGLLARCVCHEIDHLDGILYTDKMIREVE*