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scn_reactorb_scaffold_133522_3

Organism: 2019_SCN_bioreactor_inoc_reactorb_Clostridiales_33_7

near complete RP 39 / 55 MC: 1 BSCG 45 / 51 MC: 3 ASCG 12 / 38 MC: 3
Location: comp(819..1535)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CTV5_9CLOT similarity UNIREF
DB: UNIREF100
  • Identity: 60.5
  • Coverage: 223.0
  • Bit_score: 259
  • Evalue 2.10e-66
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 60.5
  • Coverage: 223.0
  • Bit_score: 259
  • Evalue 3.00e-66
RNA polymerase, sigma 27/28 subunit, RpsK/SigK similarity KEGG
DB: KEGG
  • Identity: 62.1
  • Coverage: 214.0
  • Bit_score: 258
  • Evalue 1.00e-66

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Taxonomy

Caldisalinibacter kiritimatiensis → Caldisalinibacter → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 717
TTGATTGAAGGATTAATTGAATTTATTTTTCCATTTACAATTTTTCTTTTCGGATACATAACTGCTGGCAGCTCTTTCCCACAGCCATTAAGCAAAAATGAAGAATATGAGCTAATAGAAAAATCAAAAACAGGAGATCTCGAAGCACGAAATCTGCTAATCGAACGAAATTTGCGTTTGGTTGCACATGTCGTTAAAAAATACAAATCTGTGAATATAGATCCAGAGGATTTAATTTCAATAGGTACCATAGGATTAATCAAAGCTGTTACTACATTTGATAACAACAAAGGCATTAGACTTGCTACATATGCCGCTAAATGTATTGAAAATGAAATACTTATGACCTTAAGAAGCGACAAGAAATTGAAAAATGAGATATCCCTTCACGAGCCCCTTGGAACTGACAAGGAGGGCAATAGTATATTTTTAATTGATGTTATTAAATACGAATGTGAAGAGATTATAGGCAGAATAGATAAGGAACAAAAAATTGAAATACTAAATAAAATATGGGATAAGGCACTGCTTAAAAGAGAAAAAACAATAATAGAAATGAGATATGGTATACGAAACAATGATCATAAAACACAGCGCGAAATAGCCAAACAGCTTGGCATATCACGCTCATATGTATCAAGAATTGAAAAAAAAGCTCTTAAAAAGCTCTATGATGCCTTGTTAAGCTATGAAAAGAACGAAAATAATTCTAACTAA
PROTEIN sequence
Length: 239
LIEGLIEFIFPFTIFLFGYITAGSSFPQPLSKNEEYELIEKSKTGDLEARNLLIERNLRLVAHVVKKYKSVNIDPEDLISIGTIGLIKAVTTFDNNKGIRLATYAAKCIENEILMTLRSDKKLKNEISLHEPLGTDKEGNSIFLIDVIKYECEEIIGRIDKEQKIEILNKIWDKALLKREKTIIEMRYGIRNNDHKTQREIAKQLGISRSYVSRIEKKALKKLYDALLSYEKNENNSN*