ggKbase home page

2019_SCN_bioreactor_t3_planktonic_scaffold_14648_10

Organism: 2019_SCN_bioreactor_t3_planktonic_Planctomycetes_54_6

near complete RP 46 / 55 BSCG 44 / 51 MC: 2 ASCG 12 / 38 MC: 3
Location: 13595..14380

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, FliA/WhiG family (EC:4.1.1.65) similarity KEGG
DB: KEGG
  • Identity: 84.3
  • Coverage: 261.0
  • Bit_score: 438
  • Evalue 7.90e-121
RNA polymerase sigma70 n=1 Tax=Schlesneria paludicola RepID=UPI00029B0B81 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 259.0
  • Bit_score: 512
  • Evalue 2.00e-142
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.3
  • Coverage: 261.0
  • Bit_score: 438
  • Evalue 3.90e-120

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Planctopirus limnophila → Planctopirus → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 786
ATGGTAATGAAGGTGGCGACGGAAGAAGAAATCGCTCAAGTCTGGCTGGACTTCAAGCGAGATCAATCCAATCAAGATTTGCGCAACGCACTCATCGAGCGCTTTTTGCCGCTCGTTCGCTATAACGCGGAACGCGTCTGGGCCAAACTTCCTGACGGTGTGGATCTGAACGATCTCATCTCGGCTGGGGTGTTCGGTCTCATGGATGCAATCGAGGCCTTCGATCTCGATCGCGGCGTGAAATTCGAAACATACTGCGTCCCACGTATTCGCGGGGCGATGCTGGACGAGCTGCGGACGATGGACTGGGTGCCACGTCTGGTTCGCAGCAAGGCGAGCAAGCTGGAAGCGGCGCGTAAAGAGGCGGAAGCCGAACTCGGCCGACCCCCGTCAGACGCCGAAATCGCCAAGAAAATGGGCTTGCCGATGGAGGAGTACGACAAGCACAAGTCGGAAGCCTCAGCTGTGAATCTGGTCAGCCTGAACAAGAAATGGTACGAGACCGACAGCTACAAAGATGTTCGAGAAATCGACATCATTGAAGATACAAAAGGCGAAGATCCAACCGACGGGATCCAAAAACGCGACGTGATGAAACTCGTCACGAAAGGCCTGAATCGCAACGAACGATTGATCATCATCCTCTACTATTATGAAGAGTTGACGATGAAAGAAATCGGTACGACGTTGGGACTGTCAGAGTCACGCGTCAGCCAGATGCATTCGAGCATCGTCGCCCGGTTGAAAGATCAACTGAACCGCCGCCGCCCCGAATTCGCTCAGTAG
PROTEIN sequence
Length: 262
MVMKVATEEEIAQVWLDFKRDQSNQDLRNALIERFLPLVRYNAERVWAKLPDGVDLNDLISAGVFGLMDAIEAFDLDRGVKFETYCVPRIRGAMLDELRTMDWVPRLVRSKASKLEAARKEAEAELGRPPSDAEIAKKMGLPMEEYDKHKSEASAVNLVSLNKKWYETDSYKDVREIDIIEDTKGEDPTDGIQKRDVMKLVTKGLNRNERLIIILYYYEELTMKEIGTTLGLSESRVSQMHSSIVARLKDQLNRRRPEFAQ*