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2019_SCN_bioreactor_t3_planktonic_scaffold_15336_1

Organism: 2019_SCN_bioreactor_t3_planktonic_Planctomycetes_54_6

near complete RP 46 / 55 BSCG 44 / 51 MC: 2 ASCG 12 / 38 MC: 3
Location: comp(2..682)

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; EC=5.4.99.27 {ECO:0000256|HAMAP-Rule:MF_01082};; tRNA pseudouridine(13) synthase {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA pseudouridylate synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA-uridine isomerase D {ECO:0000256|HAMAP-Rule:MF_01082}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 63.9
  • Coverage: 227.0
  • Bit_score: 309
  • Evalue 2.40e-81
tRNA pseudouridine synthase D n=1 Tax=Schlesneria paludicola RepID=UPI00029A8441 similarity UNIREF
DB: UNIREF100
  • Identity: 93.0
  • Coverage: 227.0
  • Bit_score: 443
  • Evalue 7.50e-122
tRNA pseudouridine synthase D TruD similarity KEGG
DB: KEGG
  • Identity: 63.9
  • Coverage: 227.0
  • Bit_score: 309
  • Evalue 4.80e-82

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Taxonomy

Planctopirus limnophila → Planctopirus → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 681
ATGAAGCTCAAAAGCTTGCCCGAAGATTTCGAAGTCGAAGAGCTCAGCGATTTTCCGTTGGATGGCGGGCAGTTCGCGGTTTATTTGCTCACGAAGCGATCACTGGGGACGCCCGAGGCCGTGACGGCCATTTCGGAACGCTGGAATATCCCGCGGCGCGCCATCGGTTACGGCGGTCTGAAAGACAAGCATGCGACAACACGGCAGTGGGTCACGATTCAACGCGGCCCGCGGCGCGATGTGCGGGAAGAAAGCTTTTCACTGGAATACCAGGGGCAGGCGAGCCGCCACTTTGGTCCGCAGGACATCTCCGCCAATCGCTTTTACATCGTTTTGAGGAACCTGACCGAAGCTGGCGCCGAGAAGATTGTCGGAGAACGCGACCTGGTTTCGCGGTTTGGCATTCCAAACTACTACGACGATCAGCGTTTTGGTTCACTGGGGGAATCGGGCGAGTTCATTGCAAGGCCCTGGTGCCAAGGGAATTACGAACGAGCACTCTGGCTGGCAATTGCCGAATCCAATACGCACGATCGTCCTCGTGATCGGGATGAAAAAGAGATTCTCAGGCGTTATTGGGGTGACTGGCCGTCTTGCAAATCATTACTCGACAAGTCATCACGCCGCAGTGTCATTACGTACCTCGTTGACCATCCCTCCCGTTTTCGTGAAGCCTTCGCG
PROTEIN sequence
Length: 227
MKLKSLPEDFEVEELSDFPLDGGQFAVYLLTKRSLGTPEAVTAISERWNIPRRAIGYGGLKDKHATTRQWVTIQRGPRRDVREESFSLEYQGQASRHFGPQDISANRFYIVLRNLTEAGAEKIVGERDLVSRFGIPNYYDDQRFGSLGESGEFIARPWCQGNYERALWLAIAESNTHDRPRDRDEKEILRRYWGDWPSCKSLLDKSSRRSVITYLVDHPSRFREAFA