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2019_SCN_bioreactor_t3_planktonic_scaffold_63036_2

Organism: 2019_SCN_bioreactor_t3_planktonic_Planctomycetes_54_6

near complete RP 46 / 55 BSCG 44 / 51 MC: 2 ASCG 12 / 38 MC: 3
Location: comp(1639..2316)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma70 n=1 Tax=Schlesneria paludicola RepID=UPI00029AFA93 similarity UNIREF
DB: UNIREF100
  • Identity: 94.2
  • Coverage: 225.0
  • Bit_score: 416
  • Evalue 1.70e-113
RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 64.4
  • Coverage: 202.0
  • Bit_score: 256
  • Evalue 6.30e-66
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:ADG69312.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.4
  • Coverage: 202.0
  • Bit_score: 256
  • Evalue 3.10e-65

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Taxonomy

Planctopirus limnophila → Planctopirus → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 678
ATGCCCCTCTGGCCCGAGCATAGCGTCACACAAAATCTGCTTGCGCAGGCGAAAGCGGGAGACCGCGCGGCTATCAATCGGTTGCTGGAGCGACATCGGGCCTCGCTTCGCAAACTGATTCAGCTGCGGCTTGACCGTCAGATTGCTCGTCGCGTTGATGCCAGTGACATTGTTCAGGATGTTTTGCTTGAAGCGAATACTCGCCTTGAAGACTACCTGAATGATTCACGAATGCCATTTCATCTGTGGCTCAGGCAACTCGCCCAAGACCGCATGATTGATATGCATCGTCGACACCGAGGTGCACAGCGGCGCAGCCTCGATCGCGAACGTTCGCTCGCGGCACCTCAGTTTGCCGATCAATCGGGATTCGATTTGATGGGGCAACTGGCCGATCACGAGCTGACGCCAGCCGCAGCCAGCATTCGCAAGGAATTAGAGACACGATTCCTGCTCGCGCTGGAGCAACTCGAGGACGAAGATCGAGATATCCTGCTGATGCGTCACTTCGAACAGTTGGGGAATAACGAAGTCGCTACGGCATTGGGGCTGTCCGCCGCAGCCGCGGGAATGCGGCACCTGCGAGCGCTACGTCGGCTCCGAGCGGTCCTCGGGGATCGGCCATCAAGCTCTGGTGCTCTTCTGTCGAGTCCGTCCAAGCCAGCCAGAGGTGAGTGA
PROTEIN sequence
Length: 226
MPLWPEHSVTQNLLAQAKAGDRAAINRLLERHRASLRKLIQLRLDRQIARRVDASDIVQDVLLEANTRLEDYLNDSRMPFHLWLRQLAQDRMIDMHRRHRGAQRRSLDRERSLAAPQFADQSGFDLMGQLADHELTPAAASIRKELETRFLLALEQLEDEDRDILLMRHFEQLGNNEVATALGLSAAAAGMRHLRALRRLRAVLGDRPSSSGALLSSPSKPARGE*