ggKbase home page

2019_SCN_bioreactor_t3_planktonic_scaffold_113807_13

Organism: 2019_SCN_bioreactor_t3_planktonic_Planctomycetes_54_6

near complete RP 46 / 55 BSCG 44 / 51 MC: 2 ASCG 12 / 38 MC: 3
Location: comp(17039..18502)

Top 3 Functional Annotations

Value Algorithm Source
RND family efflux transporter MFP subunit n=1 Tax=Schlesneria paludicola RepID=UPI00029A3A56 similarity UNIREF
DB: UNIREF100
  • Identity: 80.1
  • Coverage: 498.0
  • Bit_score: 759
  • Evalue 1.30e-216
RND family efflux transporter MFP subunit similarity KEGG
DB: KEGG
  • Identity: 53.3
  • Coverage: 403.0
  • Bit_score: 415
  • Evalue 1.70e-113
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ADG67065.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 53.3
  • Coverage: 403.0
  • Bit_score: 415
  • Evalue 8.60e-113

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Planctopirus limnophila → Planctopirus → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 1464
TTGTCGATACAACAGAAACCGGCTGCGAAGCCCATCACACCTCCGGAAGGCAGCAACGGTCACCTCGCGCCGTCCATTAACGGTACGAGTCACGCACATGACCTGCGCGTCGCAAATACTGCTCCGGTTCCGACGCGGAGTCACGGATGGATCGGGTGGCTTGTCGCGATTGCGATCGTGGCTGCAATCGTTCCATTTTGGTCGAACATCAAGACATATGTTGGCTTGGAAGCGAAACCCGCGTCGAAGCCTCCCGTGCGGATCATTCCCGTAGTGACGGCACCGGTCATTCAGAAGGATATGCAGGTCTATATCAATGGCCTGGGGACGGTGACTGCATTCAAGACGGTCACGATCCGCAGCCGAGTTGAAGGCGAGTTGGTGAAGGTTGCCTTCACAGAAGGACAGATTGTCAAAGAGGGAGATCTGCTGGCCGAGATCGACCGCCGGCCGTTTGATGTCCAACTGCAGCAAGCCGAAGGGCAACTCGCTCGCGATGAAGCAACGCTCAAGGCGGCCGATTTCACATTTAAACGCTACGAAGAGCTACAGGCTCAAAAGGCAATCGCAGCTCAACAAGTCGACGATCAGCGATCGATTGTTCAGCAGATGACAGGTGCCATTCAGTCGGATCGAGCGACTGTCGCCAATGCCAAGCTGCAACTCGACTATTGTCACATTACTGCGCCGATTAGCGGCCGAATTGGTTTGCGGTTGGTCGATCAGGGGAACATCGTCCGAGCCAATGATCCCAACGGTCTGGCGGTGATTACGCAGTTGCAACCAATTGCCCTGGTTTTCACGATCCCGCAGGACGATATCTCACGCGTGCAGCGGGGACACAGCGACGAAAAGCCGTTGGTCGTCACCGCGTTTGATCGCAATTTCAAAACAAAGCTGGCCCTAGGGAAACTGTCAGCCATCGACAATCAGGTCGATGCCACCACAGGCACCGTTCGGTTGAAAGCGGTGTTCGACAACGAAGATGGGTTGCTGTTCCCGAATCAGTTCGTGAATGCCCGGCTACTGGTGGATACGAAGAAGGATGCCATCGTAGTTCCGACGGCCGCTGTGCAGCGAGGCCCCAACTTCTCGTTCGTCTATGTTGTGCAGGAGGACGAAACGGTTGAGCTGCGGACTGTCACCGTCGGAATGAGTGAAGGGGCCGAGACGGCGATTGAATCGGGGTTAACACCCGGAGAAGTGGTCGTCACGGAAGGTCTCGATAAGCTGCAAAAAGGCACGAAAATCACGACAAACAGTGGTGAGAAGGGTAAGGACGGGCAAGGCAAAGGCGAAAAGAGCCCGGATTCGAAGTCGCAGGGTGATCATGGTAAAGGCGGTCACACCAGCGACAATCACACCAAAGAGGCGGCACCTGCTGAGAAGAGCCCGTCGGCCGAAAGCCGACCTGCTGAGTCCGCCAAATCGAACCATCCGGCCGCTAAAAAGAATGCGTCATGA
PROTEIN sequence
Length: 488
LSIQQKPAAKPITPPEGSNGHLAPSINGTSHAHDLRVANTAPVPTRSHGWIGWLVAIAIVAAIVPFWSNIKTYVGLEAKPASKPPVRIIPVVTAPVIQKDMQVYINGLGTVTAFKTVTIRSRVEGELVKVAFTEGQIVKEGDLLAEIDRRPFDVQLQQAEGQLARDEATLKAADFTFKRYEELQAQKAIAAQQVDDQRSIVQQMTGAIQSDRATVANAKLQLDYCHITAPISGRIGLRLVDQGNIVRANDPNGLAVITQLQPIALVFTIPQDDISRVQRGHSDEKPLVVTAFDRNFKTKLALGKLSAIDNQVDATTGTVRLKAVFDNEDGLLFPNQFVNARLLVDTKKDAIVVPTAAVQRGPNFSFVYVVQEDETVELRTVTVGMSEGAETAIESGLTPGEVVVTEGLDKLQKGTKITTNSGEKGKDGQGKGEKSPDSKSQGDHGKGGHTSDNHTKEAAPAEKSPSAESRPAESAKSNHPAAKKNAS*