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2019_SCN_bioreactor_t3_planktonic_scaffold_140129_1

Organism: 2019_SCN_bioreactor_t3_planktonic_Planctomycetes_54_6

near complete RP 46 / 55 BSCG 44 / 51 MC: 2 ASCG 12 / 38 MC: 3
Location: comp(2..1225)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-54 n=1 Tax=Schlesneria paludicola RepID=UPI00029ABE1F similarity UNIREF
DB: UNIREF100
  • Identity: 93.9
  • Coverage: 408.0
  • Bit_score: 766
  • Evalue 9.10e-219
sigma-54 factor interaction domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 60.2
  • Coverage: 400.0
  • Bit_score: 426
  • Evalue 6.30e-117
Sigma-54 factor interaction domain-containing protein {ECO:0000313|EMBL:ADG65991.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 60.2
  • Coverage: 400.0
  • Bit_score: 426
  • Evalue 3.10e-116

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Taxonomy

Planctopirus limnophila → Planctopirus → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 1224
ATGGCAAAACCGATGATTGTCGTGCTAAGTCACGATCAGCTCATGGCCGCTGAACTTCCCGGACTATTCCAGGGGCGAGCTGAGATTCGTGCATGCAGTTCGCTCGAAGATCTCTTCGGACTTACTCAAGAACACGAGCCCGCCGCACTTGTGGCGGACTTTCGCCACACTTCAAATGGCGGTCACCAGGAAACACGGATCCTGGAATCGGTTCATGAGCGTCACCCCCAAATGCGATTGGCAATGGTCACACCGGCCGCCTGTCCAGAAACTCTGGAACGCTGTGCGGCGATGACCGAAATCACACATCTGCGAGGACACCTCGACCGTGCAACTCTCTTAACTGCATTCCGTGGTCTGTTCACCGAACGAGACACCTCTATCCCGACCCCTACGACCCCATCACCCAACGCTCACACAACGGTCGTAGAATATGTCGATGATGAGCCGCTTGGCGTCCTGAGCGGCATCAGCCGACGGTACGAAACAAACTCCCCCCATCTGAAACAGATGCTGTTTGATCTCGAGGTCGCAGCTCGCCACGACGTGACGATCTTGCTGATTGGTGAGACTGGCGCCGGCAAGACATACCTTTCGCGCCTGATTCACGAGGTTTCGCTTCGTCGCCATGAACCATTCCTGCCCGTTGCGTGCGGCGCTTTGCCGAACGACTTGATCGAGAGTGAATTGTTCGGACACGCGAAAGGGGCCTTCACAAGCGCCCATCAGGACAAAGAAGGCAAATTCCTCGCCGCCCGCCGCGGTTCGATTCTTCTAGACGAAATCGACGTGCTCGGACTCGAGCAACAAGTCAAATTACTGCGAGTCATCGAAACCGGTGAGTTCGAGCCAGTCGGTTCCAACCACACACAGCATTGCCAGGCTCGGTTGATCGTCGCCAGCAATCTTGACCTGCAGCCGCTGGTCGAACAGGCTCGGTTCCGGCCCGACCTTTACTATCGTCTCAACATGTTAAAATTCGTGATTCCGCCTTTGCGGCAACGCAAGATGGATATCATTCCACTCGCGAAGAAATTCGTCCGACAGTTCGCAATGAAACACGGAGTGCGAATCGACGAAATCGATCCTGGAGTCTTTAGCTCGCTGATCGAATACCCGTGGCCAGGAAACGTTCGCGAACTCGAACATGTCGTGCAGCGCGCCGTGATCTACTGCCGCGATGGCCGCCTGCAAGCATCTCATCTACCCCAGCATATCCTGTCT
PROTEIN sequence
Length: 408
MAKPMIVVLSHDQLMAAELPGLFQGRAEIRACSSLEDLFGLTQEHEPAALVADFRHTSNGGHQETRILESVHERHPQMRLAMVTPAACPETLERCAAMTEITHLRGHLDRATLLTAFRGLFTERDTSIPTPTTPSPNAHTTVVEYVDDEPLGVLSGISRRYETNSPHLKQMLFDLEVAARHDVTILLIGETGAGKTYLSRLIHEVSLRRHEPFLPVACGALPNDLIESELFGHAKGAFTSAHQDKEGKFLAARRGSILLDEIDVLGLEQQVKLLRVIETGEFEPVGSNHTQHCQARLIVASNLDLQPLVEQARFRPDLYYRLNMLKFVIPPLRQRKMDIIPLAKKFVRQFAMKHGVRIDEIDPGVFSSLIEYPWPGNVRELEHVVQRAVIYCRDGRLQASHLPQHILS