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RBG_16_NSX_64_22_RBG_16_scaffold_5314

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_NSX_64_22_RBG_16_scaffold_5314_1
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(1..90)
DNA (90bp) protein (30aa)
lepB; signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89]
lepB; signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] Tax=RBG_16_Nitrospirae_64_22_curated
Signal peptidase I n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JYL4_DESFR
RBG_16_NSX_64_22_RBG_16_scaffold_5314_2
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(102..746)
DNA (645bp) protein (215aa)
lepB; signal peptidase I (EC:3.4.21.89)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_5314_3
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(919..2718)
DNA (1800bp) protein (600aa)
GTP-binding protein LepA Tax=RBG_16_Nitrospirae_64_22_curated
Elongation factor 4 id=3932669 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
GTP-binding protein LepA
RBG_16_NSX_64_22_RBG_16_scaffold_5314_4
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(2725..3705)
DNA (981bp) protein (327aa)
glucokinase; K00845 glucokinase [EC:2.7.1.2] Tax=RBG_16_Nitrospirae_64_22_curated
Glucokinase id=1976392 bin=GWD2_Nitrospirae-related_57_8 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
glucokinase
RBG_16_NSX_64_22_RBG_16_scaffold_5314_5
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(3818..4183)
DNA (366bp) protein (122aa)
6-pyruvoyl-tetrahydropterin synthase; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] Tax=RBG_16_Nitrospirae_64_22_curated
6-pyruvoyl-tetrahydropterin synthase
6-carboxy-5,6,7,8-tetrahydropterin synthase id=2052392 bin=GWA2_Deltaproteo_65_63 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
RBG_16_NSX_64_22_RBG_16_scaffold_5314_6
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(4477..5079)
DNA (603bp) protein (201aa)
RNA methyltransferase, TrmH family, group 1; K02533 tRNA/rRNA methyltransferase [EC:2.1.1.-] Tax=RBG_16_Nitrospirae_64_22_curated
tRNA (Cytidine/uridine-2'-O-)-methyltransferase TrmJ n=1 Tax=Desulfotignum phosphitoxidans DSM 13687 RepID=S0FYE4_9DELT
RNA methyltransferase, TrmH family, group 1
RBG_16_NSX_64_22_RBG_16_scaffold_5314_7
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(5307..5807)
DNA (501bp) protein (167aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_5314_8
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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5928..6674
DNA (747bp) protein (249aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_5314_9
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(6711..7139)
DNA (429bp) protein (143aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_5314_10
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(7260..9944)
DNA (2685bp) protein (895aa)
ATPase, P-type (transporting), HAD superfamily, subfamily IC (EC:3.6.3.8) Tax=RBG_16_Nitrospirae_64_22_curated
ATPase, P-type (transporting), HAD superfamily, subfamily IC (EC:3.6.3.8)
ATPase, P-type (Transporting), HAD superfamily, subfamily IC n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B219_9PROT
RBG_16_NSX_64_22_RBG_16_scaffold_5314_11
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(9949..10800)
DNA (852bp) protein (284aa)
universal stress protein Tax=RBG_16_Nitrospirae_64_22_curated
Universal stress protein family id=3240148 bin=GWF2_Nitrospirae_44_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
universal stress protein
RBG_16_NSX_64_22_RBG_16_scaffold_5314_12
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(10912..12144)
DNA (1233bp) protein (411aa)
S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] Tax=RBG_16_Nitrospirae_64_22_curated
methionine adenosyltransferase (EC:2.5.1.6) id=14429139 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
S-adenosylmethionine synthetase (EC:2.5.1.6)
RBG_16_NSX_64_22_RBG_16_scaffold_5314_13
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(12120..12659)
DNA (540bp) protein (180aa)
cysC2; adenylyl-sulfate kinase (EC:2.7.1.25); K00860 adenylylsulfate kinase [EC:2.7.1.25] Tax=RBG_16_Nitrospirae_64_22_curated
cysC2; adenylyl-sulfate kinase (EC:2.7.1.25); K00860 adenylylsulfate kinase [EC:2.7.1.25] id=14429140 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Crenarchaeota tax=bin3_NC10 organism_group=NC10
cysC2; adenylyl-sulfate kinase (EC:2.7.1.25)
RBG_16_NSX_64_22_RBG_16_scaffold_5314_14
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(12656..13762)
DNA (1107bp) protein (369aa)
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein id=14624651 bin=bin5_DeltaP species=Methanosaeta harundinacea genus=Methanosaeta taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=bin5_DeltaP organism_group=Deltaproteobacteria
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_5314_15
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

13969..16407
DNA (2439bp) protein (813aa)
clpB3; chaperone protein ClpB; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC Tax=RBG_16_Nitrospirae_64_22_curated
Chaperone protein ClpB id=4047555 bin=GWC2_Nitrospirae_57_13 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
clpB3; chaperone protein ClpB
RBG_16_NSX_64_22_RBG_16_scaffold_5314_16
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(16542..18557)
DNA (2016bp) protein (672aa)
NAD-dependent DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] Tax=RBG_16_Nitrospirae_64_22_curated
NAD-dependent DNA ligase (EC:6.5.1.2)
DNA ligase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HME7_9FIRM
RBG_16_NSX_64_22_RBG_16_scaffold_5314_17
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(18557..19810)
DNA (1254bp) protein (418aa)
GAF sensor-containing diguanylate cyclase Tax=RBG_16_Nitrospirae_64_22_curated
Conserved uncharacterized protein id=4087792 bin=GWC2_Deltaproteobacteria_42_51 species=ACD39 genus=ACD39 taxon_order=ACD39 taxon_class=ACD39 phylum=unknown tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
sensor diguanylate cyclase, GAF domain-containing
RBG_16_NSX_64_22_RBG_16_scaffold_5314_18
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(19816..20625)
DNA (810bp) protein (270aa)
hypothetical protein; K06990 Tax=RBG_16_Nitrospirae_64_22_curated
Putative uncharacterized protein id=4042392 bin=GWC2_Proteo_65_14_Ab886 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
MEMO-like protein
RBG_16_NSX_64_22_RBG_16_scaffold_5314_19
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(20622..21287)
DNA (666bp) protein (222aa)
Tax=RBG_16_Nitrospirae_64_22_curated
RBG_16_NSX_64_22_RBG_16_scaffold_5314_20
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

21781..23127
DNA (1347bp) protein (449aa)
ttuD; putative hydroxypyruvate reductase (EC:1.1.1.81); K00050 hydroxypyruvate reductase [EC:1.1.1.81] Tax=RBG_16_Nitrospirae_64_22_curated
ttuD; putative hydroxypyruvate reductase (EC:1.1.1.81)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. 6_1_46AFAA RepID=G1URU5_9DELT
RBG_16_NSX_64_22_RBG_16_scaffold_5314_21
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(23133..23510)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JBQ9_ANAD2
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_5314_22
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(23507..24292)
DNA (786bp) protein (262aa)
hypothetical protein Tax=RBG_16_Nitrospirae_64_22_curated
Uncharacterized protein id=3932665 bin=GWC2_Nitrospirae-rel_56_14 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
RBG_16_NSX_64_22_RBG_16_scaffold_5314_23
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(24471..25028)
DNA (558bp) protein (186aa)
id=4740861 Tax=RBG_16_Nitrospirae_64_22_curated
id=4740861 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RBG_16_NSX_64_22_RBG_16_scaffold_5314_24
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(25056..25739)
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00035F33BE
high-affinity nickel-transporter Tax=RBG_16_Nitrospirae_64_22_curated
putative High-affinity nickel/cobalt-transporter
RBG_16_NSX_64_22_RBG_16_scaffold_5314_25
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(25773..25892)
DNA (120bp) protein (40aa)
Tax=RBG_16_Nitrospirae_64_22_curated
Displaying 25 items

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