ggKbase home page

Planctomycetes bacterium RIFOXYD12_FULL_42_12

RIFOXYD12_FULL_RIFOXYD12_FULL_Planctomycetes_42_12_curated_36_1
In projects: 2500-curated-genomes  |  RIFOXYD12_FULL  |  2500-genomes  |  2500-curated-genomes-non-redundant  |  rifle_organic_carbon  |  rifle-organic-carbon-non-redundant  |  ggdb

Consensus taxonomy: RIFOXYD12_FULL_Planctomycetes_42_12_curated  →  Planctomycetes  →  Bacteria

Displaying items 51-100 of 1018 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
rifoxyd3_full_scaffold_7124_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (57.14%)
7 2886 bp 38.91 1.00 58.11
rifoxyd3_full_scaffold_47384_curated 0 1701 bp 35.39 1.00 0.00
rifoxyd3_full_scaffold_31432_curated
Phylum: Planctomycetes (100%)
3 1153 bp 34.26 1.00 59.84
rifoxyd3_full_scaffold_21418_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (66.67%)
3 1840 bp 34.35 1.00 67.34
rifoxyd3_full_scaffold_23754_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (50%)
2 1190 bp 37.56 1.00 69.08
rifoxyd3_full_scaffold_20932_curated 0 928 bp 42.56 1.00 0.00
rifoxyd3_full_scaffold_3431_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (83.33%)
6 4664 bp 38.34 1.00 56.35
rifoxyd3_full_scaffold_8266_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (50%)
4 2682 bp 38.29 1.00 32.33
rifoxyd3_full_scaffold_10646_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (100%)
3 2210 bp 34.57 1.00 25.38
rifoxyd3_full_scaffold_9180_curated 0 2354 bp 46.22 1.00 0.00
rifoxyd3_full_scaffold_28092_curated
Species: RIFOXYD2_FULL_Planctomycetes_41_16_curated (100%)
1 630 bp 42.86 1.00 81.43
rifoxyd3_full_scaffold_84468_curated 3 1109 bp 39.95 1.00 40.04
rifoxyd3_full_scaffold_9344_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (83.33%)
6 2458 bp 35.31 1.00 53.82
rifoxyd3_full_scaffold_17785_curated 0 1189 bp 42.72 1.00 0.00
rifoxyd3_full_scaffold_8592_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (75%)
4 3418 bp 37.57 1.00 58.37
rifoxyd3_full_scaffold_19544_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (100%)
2 1364 bp 25.59 1.00 28.37
rifoxyd3_full_scaffold_15937_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (100%)
1 1042 bp 22.84 1.00 39.73
rifoxyd3_full_scaffold_39564_curated 0 720 bp 39.44 1.00 0.00
rifoxyd3_full_scaffold_19892_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (100%)
5 1419 bp 41.37 1.00 95.35
rifoxyd3_full_scaffold_24043_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (100%)
3 1168 bp 43.32 1.00 79.11
rifoxyd3_full_scaffold_34085_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (100%)
3 1860 bp 39.03 1.00 67.26
rifoxyd3_full_scaffold_30883_curated 0 695 bp 37.84 1.00 0.00
rifoxyd3_full_scaffold_33594_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (100%)
1 706 bp 47.73 1.00 99.86
rifoxyd3_full_scaffold_3817_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (85.71%)
7 4387 bp 39.14 1.00 80.15
rifoxyd3_full_scaffold_22504_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (100%)
3 2519 bp 43.15 1.00 86.11
rifoxyd3_full_scaffold_27990_curated 0 1601 bp 35.92 1.00 0.00
rifoxyd3_full_scaffold_61824_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (75%)
4 1459 bp 31.87 1.00 60.04
rifoxyd3_full_scaffold_32278_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (100%)
2 1882 bp 43.04 1.00 44.95
rifoxyd3_full_scaffold_34721_curated 2 413 bp 29.54 1.00 49.39
rifoxyd3_full_scaffold_7047_curated 0 4905 bp 37.72 1.00 0.00
rifoxyd3_full_scaffold_9030_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (66.67%)
6 3327 bp 36.61 1.00 46.98
rifoxyd3_full_scaffold_17150_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (100%)
1 1147 bp 30.51 1.00 18.05
rifoxyd3_full_scaffold_38873_curated 0 720 bp 18.19 1.00 0.00
rifoxyd3_full_scaffold_13091_curated 0 3316 bp 41.22 1.00 0.00
rifoxyd3_full_scaffold_28240_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (100%)
1 958 bp 34.13 1.00 14.41
rifoxyd3_full_scaffold_43116_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (100%)
2 799 bp 39.42 1.00 58.57
rifoxyd3_full_scaffold_4236_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (100%)
6 3685 bp 40.76 1.00 55.77
rifoxyd3_full_scaffold_14600_curated 0 1791 bp 34.79 1.00 0.00
rifoxyd3_full_scaffold_12692_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (100%)
5 3020 bp 40.83 1.00 74.40
rifoxyd3_full_scaffold_3899_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (75%)
4 4238 bp 34.66 1.00 76.17
rifoxyd3_full_scaffold_26542_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (100%)
2 1143 bp 21.61 1.00 15.49
rifoxyd3_full_scaffold_7042_curated 0 2611 bp 38.15 1.00 0.00
rifoxyd3_full_scaffold_10766_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (100%)
3 3545 bp 26.43 1.00 17.43
rifoxyd3_full_scaffold_6108_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (100%)
4 3155 bp 37.43 1.00 78.45
rifoxyd3_full_scaffold_21392_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (100%)
2 1218 bp 40.23 1.00 75.37
rifoxyd3_full_scaffold_95692_curated 0 550 bp 43.27 1.00 0.00
rifoxyd3_full_scaffold_32406_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (100%)
1 1188 bp 40.15 1.00 80.30
rifoxyd3_full_scaffold_43169_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (100%)
1 809 bp 39.56 1.00 99.75
rifoxyd3_full_scaffold_16821_curated
Species: RIFOXYD12_FULL_Planctomycetes_42_12_curated (100%)
4 2149 bp 34.39 1.00 73.71
rifoxyd3_full_scaffold_23610_curated 0 1457 bp 19.35 1.00 0.00
Displaying items 51-100 of 1018 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.