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400_ZONE1_2014_Ig3401_Miz_z1_400_2014_Hadesarchaea_52_43

400_ZONE1_2014_IG3401_unknown_52_43
In projects: 400_ZONE1_2014_IG3401  |  mizunami_genomes

Consensus taxonomy:

Taxonomy override: Archaea

Metagenomic Context

Parent: 400_zone1_2014_Ig3401_UNK

Properties

Avg. coverage: 43.39 Longest contig: 173.34 Kbp Bin length: 1.38 Mbp GC content: 51.94 %
Contigs count: 33 Features count: 1561 rRNAs count: 1 tRNAs count: 37

Genome completeness

near complete RP 35 / 55 MC: 7 BSCG 25 / 51 ASCG 38 / 38

Description

Intersect_Ig3401.019_&_Ig3401.023 Hadesarchaea based on rpS3 at NCBI (YA)

Displaying 33 items
contig # features sequence size GC content (%) Cov Coding Density (%) notes
400_zone1_2014_Ig3401_scaffold_122
Domain: Archaea (52.07%)
217 173338 bp 52.82 44.38 85.59
400_zone1_2014_Ig3401_scaffold_19 175 141321 bp 52.03 43.69 90.46
400_zone1_2014_Ig3401_scaffold_54 118 90718 bp 53.11 43.21 91.44
400_zone1_2014_Ig3401_scaffold_103 86 79145 bp 50.62 44.19 88.30
400_zone1_2014_Ig3401_scaffold_90 74 82167 bp 48.61 41.06 89.99
400_zone1_2014_Ig3401_scaffold_93 67 62152 bp 48.70 42.43 93.48
400_zone1_2014_Ig3401_scaffold_111 62 55518 bp 53.26 43.34 87.74
400_zone1_2014_Ig3401_scaffold_134 59 51841 bp 54.47 44.66 88.87
400_zone1_2014_Ig3401_scaffold_261 58 52473 bp 51.26 42.69 87.80
400_zone1_2014_Ig3401_scaffold_399 57 50524 bp 53.49 43.29 92.02
400_zone1_2014_Ig3401_scaffold_625 49 46727 bp 51.59 45.13 74.08
400_zone1_2014_Ig3401_scaffold_281 47 43413 bp 48.05 39.86 89.51
400_zone1_2014_Ig3401_scaffold_172
Domain: Archaea (53.49%)
43 45221 bp 52.56 42.10 91.97
400_zone1_2014_Ig3401_scaffold_227 40 39669 bp 54.07 43.58 92.53
400_zone1_2014_Ig3401_scaffold_278 40 35688 bp 50.92 41.51 94.12
400_zone1_2014_Ig3401_scaffold_779 39 33677 bp 52.43 44.04 81.95
400_zone1_2014_Ig3401_scaffold_725 38 30394 bp 51.20 44.15 83.02
400_zone1_2014_Ig3401_scaffold_366 34 30461 bp 53.33 43.71 89.69
400_zone1_2014_Ig3401_scaffold_537 31 24435 bp 53.51 44.70 89.86
400_zone1_2014_Ig3401_scaffold_522 30 24729 bp 51.13 43.42 90.52
400_zone1_2014_Ig3401_scaffold_574 27 23169 bp 51.99 42.42 86.25
400_zone1_2014_Ig3401_scaffold_485 23 25887 bp 53.94 45.25 90.68
400_zone1_2014_Ig3401_scaffold_505
Domain: Archaea (60.87%)
23 25360 bp 51.48 43.15 94.57
400_zone1_2014_Ig3401_scaffold_910 22 17740 bp 52.61 46.47 84.14
400_zone1_2014_Ig3401_scaffold_739 20 19987 bp 52.32 41.57 82.27
400_zone1_2014_Ig3401_scaffold_1163 16 15245 bp 53.51 44.84 90.95
400_zone1_2014_Ig3401_scaffold_1587 15 12526 bp 54.02 41.47 88.40
400_zone1_2014_Ig3401_scaffold_1670
Domain: Archaea (58.33%)
12 12140 bp 52.69 46.66 94.30
400_zone1_2014_Ig3401_scaffold_2706 10 8995 bp 50.65 46.03 82.88
400_zone1_2014_Ig3401_scaffold_4186
Species: marine sediment metagenome (50%)
10 6748 bp 54.79 43.34 78.57
400_zone1_2014_Ig3401_scaffold_3621
Domain: Bacteria (55.56%)
9 7451 bp 47.82 40.43 92.89
400_zone1_2014_Ig3401_scaffold_9187 5 3781 bp 52.21 41.09 80.38
400_zone1_2014_Ig3401_scaffold_6097
Phylum: Euryarchaeota (60%)
5 5176 bp 54.58 45.04 88.16
Displaying 33 items

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.