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64_010_scaffold_422_5

Organism: 64_010_Atopobium_48_11

near complete RP 49 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 13 / 38
Location: comp(6130..7497)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigA n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W713_ATOPD similarity UNIREF
DB: UNIREF100
  • Identity: 97.1
  • Coverage: 455.0
  • Bit_score: 854
  • Evalue 4.90e-245
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 455.0
  • Bit_score: 871
  • Evalue 4.10e-250
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 97.1
  • Coverage: 455.0
  • Bit_score: 854
  • Evalue 1.50e-245

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Taxonomy

Atopobium sp. ICM42b → Atopobium → Coriobacteriales → Coriobacteriia → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1368
GTGGCTGCAAAAAAGGCAAATGAAGAGGTCAAACTCTCAGATGAGCTTACTAAAATTGTTGATGATCTGGTAAGTTCTTCAAAGTCTAACGGTAGTATCAGCGAAGACGATATTCAGGTTGCCATTCGTGACGTTGACGTTAACGATGATGAGCTTTCTGATCTGTACGATTCGCTGCGCGTTAAAGGTGTAGAGATTACTACCGCATCTGAAGCAACCGTTTCTTTCGCCATTGAAGATGACACCGTAGAGGATGATTTTTCATCCGATGATGACATGGATGACTCATCTGATTTTGAAGATGAAGATGATGAAGATTTTGATGCCGTAAATGAGGCACGTGAGGTCAAAGAGGCTCTCCGCTCTGTTTCTAAGGCAAAAGTCTCTAAGCCAAAACGTTCTTCTCGCGCTCGTGCTCGTCGCTCAGATACCACCACGGTTATGCTTACCGGCGATCCTGTCCGCATGTATCTTAAAGAGATTGGTAAGGTAGACCTGCTTACTGCATCAGAAGAGGTTCACCTTGCTATGAAGATTGAGGCAGGTACTGCGGCTTCCCAGAAGCTGGAGGACTTTGAGGATGGCCTCATCGAGCTCAACCGTGCAGAGCAGCGTCGCCTCATGCGTATTGAGTCCGTAGGACTTGACGCTAAGCAGCAGCTTATCTCTGCAAACCTTCGTCTTGTCGTCTCAATTGCTAAGCGCTATGTTGGCCGTGGCATGCTGTTCCTCGATCTTATCCAGGAAGGTAACCTGGGCCTTATTCGTGCTGTCGAGAAGTTCGACTACACCAAGGGCTTTAAGTTCTCAACATATGCTACATGGTGGATTCGCCAGGCAATTACCCGTGCTATTGCGGATCAAGCTCGTACCATTCGTATTCCTGTTCACATGGTAGAGACCATCAATAAGCTTATCCGTGTTCAGCGTCAGCTTCTGCAAGATCTTGGTAGAGATCCTTCTCCAGAAGAGATTGGCGCAGAAATGGGTATGTCTCCTGATCGTGTCCGCGAGATTCAGAAGATTAGCCAGGAGCCCGTCTCTCTTGAGACTCCTATTGGTGAAGAAGAAGATTCCCAGCTTGGAGACTTTATTGAGGACTCTTCAGCTGTTGCTCCACCAGATGCAGCTTCTGATTCAATGCTTCGTGAGCAGCTTGAGCAGGTTCTTGACGGCCTTGCTGATCGTGAACGTAAGGTTATTAAGTTCCGCTTTGGTCTTGAGGACGGTCATCCTCGTACCCTTGAAGAGGTAGGCAAGGAGTTTGGTGTTACGCGTGAGCGTATTCGTCAGATTGAGTCCAAGACCTTGGCAAAGCTTCGTCATCCTTCTAGGTCCGGTCGTCTTAAGGACTACATGGAGGAGTAG
PROTEIN sequence
Length: 456
VAAKKANEEVKLSDELTKIVDDLVSSSKSNGSISEDDIQVAIRDVDVNDDELSDLYDSLRVKGVEITTASEATVSFAIEDDTVEDDFSSDDDMDDSSDFEDEDDEDFDAVNEAREVKEALRSVSKAKVSKPKRSSRARARRSDTTTVMLTGDPVRMYLKEIGKVDLLTASEEVHLAMKIEAGTAASQKLEDFEDGLIELNRAEQRRLMRIESVGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPSPEEIGAEMGMSPDRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDSSAVAPPDAASDSMLREQLEQVLDGLADRERKVIKFRFGLEDGHPRTLEEVGKEFGVTRERIRQIESKTLAKLRHPSRSGRLKDYMEE*