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71_007_scaffold_13_5

Organism: 71_007_Bifidobacterium_scardovii_65_86

near complete RP 52 / 55 MC: 8 BSCG 51 / 51 MC: 2 ASCG 14 / 38
Location: comp(3673..7269)

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.5
  • Coverage: 999.99
  • Bit_score: 2337
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHD2_BIFBI similarity UNIREF
DB: UNIREF100
  • Identity: 88.0
  • Coverage: 999.99
  • Bit_score: 2090
  • Evalue 0.0
mfd; transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 88.0
  • Coverage: 999.99
  • Bit_score: 2090
  • Evalue 0.0

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Taxonomy

Bifidobacterium scardovii → Bifidobacterium → Bifidobacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 3597
ATGGCCGATAAGGCGAACCAGTCGAACGGCGCCACGGGCGAGCGGCACCTCGCCCTGATCAACGGATCGCTGTCGGGCATCCTGGAACGGCTCGACGCCGATCCGTCCTTCCATGCGCTGGCCGCCGGGCGCGTCGACCGGGACGACGCGGCGGCCGCCGACCCGTCGATCGTCGTCGGCGCCCCCGCGGGCCTGCGGCCGGCTCTGGCCGCCGCCGTGGCCGCCAGACGGCCGGTCGTGTTCGTCGTCGCCTCGGGCCGCGAGGCCGAGGACACCGTGGACGCGCTGCGCTCGTGGTACGGCGGCGATCCGAACGACATCGCGCAGCTCGAGGCGTGGGAGACGCTGCCGCATGAGCGGCTGAGCCCGCGCGCCGACACCGTGGCGAACCGCATGGCCGTGTTCCGCCGCCTGGCGCACCCGAGCGGGACGAATCCGATGTTCGGCCCGATCCGCATCCTCGTCGTGCCGGTCCGTTCGCTCATCCAGCCCGTGGTCCGTGGCCTGGGCGACGTGGAGCCGCTCGTGTTCACGGCCGGCGAGGAGCTGGCGCTCGACGAGGCGGCCCGCCGTCTGGTCGAAAACTCGTACACGCGCGTCGATCTGGTCATGGACCGCGGCGAATTCGCGGTGCGCGGCGGCATCATCGACGTGTTCCCGCCGACCGCGCCCCACCCGGTGCGCATCGAGTTCTTCGGCGACGAGATCGACACGATCCGGGAGTTCCACGCCTCCGACCAGCGCACCTACGGCGAGCCCAAGCGCACGATCTGGGCCACCGCCTGCCGCGAGCTGCAGCTCACCGAGGCGATCCGCGGCCGCGCGCGGCGGCTGATCGGCCAGATCCCGAACGCCGAGGATATGCTCGAATCGATCGCCAACGCGATTCCGGTCGAGGGCATGGAATCCCTGATGCCCGCGCTCGTGGACGACATGGAGCCGGTGACCGGCATGCTGGACAAGCGCGCGGTCGTGATGCTCTCCGACCCGGAGAAGCTGCGCCGTTCCGCCGAGGACCTGTCCAAGACCGCGAACGAGTTCCTCGCCGCAAGCTGGCATGTGGCCGCATCGGGCCACGGCGCCGGCGCGCCGATCAGCTTCGACCGGGCGAGCTTCCTCGACTTCGACGAGACGATCAGCGCGCTCGAATACGCCAACCACGACATCTACCGACTGACGAGCTTCGGCGTCGACGCGAGCCTGCCCGGCCACGTCAGCCTCGCAGCGGCCAACCCTGGCGCATACCGCGGCGACGAGGCGAAGGCCGCGAGCGGCATCGAGGGGCTCATCGGCGAGGGGATCGACGTCACCGTCACCGCCGCCGCGGCCGGCACGCTCGCGCGGCTCAAGCGCGCGATCAACGAGACCGGCATCGCCAGCTTCGCGGTGATCCGCTCGCAGGCCATCGACGGCTTCGTCGACACGGCGGCCAAGGTCGCGCTGCTCACCGAACGCGACCTGACCGGCCGCGCCTCCGCCGCCGGCCAGGCGAAAACGCCGAAGCGCCGCCGCAAGGCCATCGACCTGATGGAGCTGAAGACCGGCGACTACGTGGTGCACGAGCAGCACGGCATCGGCCGGTTCGTCGGCATGCGCCAGCGCACCATCGGCACCGGCGCCAACCGGACGACGCGCGAATACCTGGTCATCGAATACGCGCCGAGCAAACGCGGCGCACCGGCCGACAAGCTGTTCATCCCGACCGACCAGCTCGACCAGATCAGCAAGTACATCGGCGCGGAGGCCCCGAAGCTCAACAAGCTCGGCGGCTCCGACTGGGCGGCTACCAAGGCGAAGGCCCGCAAGCACGTCCACGAGATCGCCGAGGACCTGGTCAAGCTGTATTCGGCCCGCCAGCGCACCCCCGGCTTCGCGTTCAGCCCCGACACCCCGTGGCAGAAGGAGCTGGAGGACGCGTTCCCGTACCAGGAGACCGCCGACCAGCTCACCACCATCGACGAGGTCAAGGCCGACATGGAAAAGCCGGTCCCGATGGACCGCCTGATCTGCGGCGACGTCGGCTTCGGCAAGACCGAGATCGCCGTGCGCGCCGCCTTCAAGGCCATCCAGGACGGCAAGCAGGTCGCCGTGCTCGTGCCGACGACGCTGCTCGTCCAGCAGCACTACGAGACCTTCGCCGAGCGTTACGAGGGATTTCCGGTCACGATCGCCGCCATGAGCCGGTTCCAGACCGCCAAGGAGATCAACGAGACCATCGAGGGGCTGGAGAGCGGCGGCGTCGACATCGTCATCGGCACGCACAAGCTGCTGAACCCGAAGATCAAGTTCAAGGATCTCGGTCTGGTCATCATCGACGAGGAGCAGCGCTTCGGCGTCGAGCACAAGGAGACGCTCAAGGCCCTGCGCACCAACGTCGACGTGCTGTCGCTGTCGGCCACGCCCATCCCTCGCACGCTGGAGATGGCGGTGACCGGCATCCGCGAGATGTCCACGCTGGCCACGCCGCCGGAGGACCGCCTTCCCGTGCTCACTTACGTCGGCGCATACGAGGACGCGCAGGTCACGGCCGCGGTGCGCCGCGAGCTGCTGCGCGGGGGACAGGTGTTCTACGTGCACAACCGCGTGCAGGACATCGCGAAGACGGCGGCGAAGATCCACGAGCTCGTGCCCGAGGCGCGCGTCGGCATCGCGCACGGCAAGATGGGGGAGAAGCAGCTCGACCAGATCATCCGCGACTTCTGGCATCGCGACATCGACGTGCTCGTGTGCACGACGATCATCGAGACCGGTCTGGATATCTCCAACGCGAACACGCTGATCGTCGACCGAGCCGACCGCTTCGGCCTCTCGCAGCTGCACCAGCTGCGCGGGCGCGTCGGCCGCGGCCGCGAGCGCGCGTACGCATACTTCCTGTACGATCCGTCCAAGCCGCTGACCCAGCAGTCGCACGACCGCCTGGCGACGATCGCGCAGAACACGGCGCTCGGCTCCGGATTCGACGTGGCGATGAAGGACCTGGAGCTGCGCGGCACCGGCAACCTGCTCGGCGACGAGCAGTCCGGGCACATCGAGGGCGTCGGCTTCGACCTGTACATCCGCATGGTGTCCGAGGCGGTCGAGCAGTACAAGGAGCCCGAACGCACCGAGCCGGTGGCCGTGTCGATCGACCTGCCGATCGAGGCGTCGATCCCGGTGGACTACATCGACTCCGACAAGCTGCGGCTCGAGGCGTACCGCAAGCTGGCGGCGGCGCGCACCGAGCAGGATCTCAAGGACCTGGCCGAGGAGCTGACCGACCGCTACGGCAAGCTGCCCGAGGAGTTCGAGACGCTGTTCGGCGTGGCCCGCCTGCGCGCCAAGGCGCGCAAGCTCGGCATCTCCGAGATCATCGCGCAGGGCCGTAACGTGCGCATCGCCAAGGTCGACCCGCCCGAATCGATCCAGATGCGCATCAACCGCATCTACAAGGGCGCGCAGTACCGCCCGGTCACCCACACCTACCTGATCCCGACCCCCTTCGCCGGCTCGCTCGGCGCCGGCCCCATGCCCGGCGAGCAGGTCATGGACTGGACCAGCGACCTCCTCAACGACTTTGCATGGACGCCATCGTTAAACAAACGGCAGAGCCGTTTGTAG
PROTEIN sequence
Length: 1199
MADKANQSNGATGERHLALINGSLSGILERLDADPSFHALAAGRVDRDDAAAADPSIVVGAPAGLRPALAAAVAARRPVVFVVASGREAEDTVDALRSWYGGDPNDIAQLEAWETLPHERLSPRADTVANRMAVFRRLAHPSGTNPMFGPIRILVVPVRSLIQPVVRGLGDVEPLVFTAGEELALDEAARRLVENSYTRVDLVMDRGEFAVRGGIIDVFPPTAPHPVRIEFFGDEIDTIREFHASDQRTYGEPKRTIWATACRELQLTEAIRGRARRLIGQIPNAEDMLESIANAIPVEGMESLMPALVDDMEPVTGMLDKRAVVMLSDPEKLRRSAEDLSKTANEFLAASWHVAASGHGAGAPISFDRASFLDFDETISALEYANHDIYRLTSFGVDASLPGHVSLAAANPGAYRGDEAKAASGIEGLIGEGIDVTVTAAAAGTLARLKRAINETGIASFAVIRSQAIDGFVDTAAKVALLTERDLTGRASAAGQAKTPKRRRKAIDLMELKTGDYVVHEQHGIGRFVGMRQRTIGTGANRTTREYLVIEYAPSKRGAPADKLFIPTDQLDQISKYIGAEAPKLNKLGGSDWAATKAKARKHVHEIAEDLVKLYSARQRTPGFAFSPDTPWQKELEDAFPYQETADQLTTIDEVKADMEKPVPMDRLICGDVGFGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQHYETFAERYEGFPVTIAAMSRFQTAKEINETIEGLESGGVDIVIGTHKLLNPKIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAVRRELLRGGQVFYVHNRVQDIAKTAAKIHELVPEARVGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDRADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPLTQQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYIRMVSEAVEQYKEPERTEPVAVSIDLPIEASIPVDYIDSDKLRLEAYRKLAAARTEQDLKDLAEELTDRYGKLPEEFETLFGVARLRAKARKLGISEIIAQGRNVRIAKVDPPESIQMRINRIYKGAQYRPVTHTYLIPTPFAGSLGAGPMPGEQVMDWTSDLLNDFAWTPSLNKRQSRL*