ggKbase home page

71_012_scaffold_625_1

Organism: 71_012_Varibaculum_cambriense_54_6

partial RP 36 / 55 MC: 1 BSCG 37 / 51 MC: 2 ASCG 9 / 38 MC: 1
Location: comp(245..1165)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.0
  • Coverage: 306.0
  • Bit_score: 517
  • Evalue 1.30e-143
RluA family pseudouridine synthase (EC:3.2.1.17); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] similarity KEGG
DB: KEGG
  • Identity: 58.4
  • Coverage: 308.0
  • Bit_score: 348
  • Evalue 2.40e-93
RNA pseudouridine synthase n=1 Tax=Varibaculum cambriense RepID=UPI0003B3E5CB similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 306.0
  • Bit_score: 606
  • Evalue 1.60e-170

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Varibaculum cambriense → Varibaculum → Actinomycetales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 921
ATGCGTGAACGGGTTCAGATACTGCTCCCAGAAGGTGCGCACGGCAAGCGCCTTGACCAAGTATTAGCAGCTGAACTGGGGATTTCCCGTTCCCTGGTTGCCAAACTGATTAAACAAAAAGAGGTAAAGGTTAACGGAGTAGTTTCGCGAAAATCGGCGGAGGTAGCTCGCGGTGACCAGGTGGAAGTGCTGCTGCCCGATACCTCCCCCCAGAGTTTAGAAACTCCGGCGCCGCTTCCGATTCTGTATCGGGACGCCGATATCGTGGTGGTCAATAAACCGGTAGGGATGGCGGCGCATTCTGCTCCCGGTTGGCAGGGGCCGACGGTTGTTGGTGCCCTGTTGGCGGCGGGAGAAGAAATCGTTACCTCCGGTCCGATAGAGCGGACAGGAATCGTTCACCGCTTAGACGTGGGAACTTCTGGGGCTATGGTAGTGGCCAAGTCGGAGTTAGCCTATGGCCGGTTGCAGGATGATTTTCGCGAGCGCCGGGTGAAGAAGATTTATCATGCTTTGGTGCAAGGCTATCTAGATCCGCCTGCGGGAACTATTGATGCCCCGATTGGGCGTCATCCTTCCCGTGATTTCAAAATGGCGGTAGTTGCCGGGGGTAGACCGGCCATAACCCATTACCGCACCTTGGAGTCCTTACCGGGGGCGTCACTGCTCGAGGTGCAGCTGGAGACGGGGCGGACGCATCAGATTCGAGTGCATATGGAAGCAATTGGGCATGGGATCGTAGGTGATCCGATATATGGGGCAAATCCGCACCTAGCGCAGAAACTGGGGTTGACCCGGCAGTGGCTTCATGCGGTGACCTTGGGGTTTGTCCATCCGGTAACCGGTGAGCAAATTAGTTTTCAGGCCCCTTTACCCGCTGATTTAGAGGACGTATTAACCCGCTTGCACCGCGGATTCTGA
PROTEIN sequence
Length: 307
MRERVQILLPEGAHGKRLDQVLAAELGISRSLVAKLIKQKEVKVNGVVSRKSAEVARGDQVEVLLPDTSPQSLETPAPLPILYRDADIVVVNKPVGMAAHSAPGWQGPTVVGALLAAGEEIVTSGPIERTGIVHRLDVGTSGAMVVAKSELAYGRLQDDFRERRVKKIYHALVQGYLDPPAGTIDAPIGRHPSRDFKMAVVAGGRPAITHYRTLESLPGASLLEVQLETGRTHQIRVHMEAIGHGIVGDPIYGANPHLAQKLGLTRQWLHAVTLGFVHPVTGEQISFQAPLPADLEDVLTRLHRGF*