ggKbase home page
Advanced Search
Search Help

ALUMROCK_MS11_Chromatiales_related_55_29_curated

ALUMROCK_MS11_Gammaproteobacteria_55_1
In projects: ALUMROCK_MS11  |  alumrock-genomes

Consensus taxonomy: Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: ALUMROCK_MS11_Chromatiales_related_55_29 Manually curated genome
Original version: ALUMROCK_MS11_Chromatiales_related_55_29

Properties

Avg. coverage: 1.00 Longest contig: 30.68 Kbp Bin length: 1.63 Mbp GC content: 54.70 %
Contigs count: 453 Features count: 2011 rRNAs count: 0 tRNAs count: 17

Genome completeness

near complete RP 51 / 55 MC: 3 BSCG 49 / 51 MC: 3 ASCG 10 / 38 MC: 3
Displaying items 1-50 of 453 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
ar11r2_scaffold_9202 3 2956 bp 63.57 1.00 104.53
ar11r2_scaffold_36386
Species: endosymbiont of Riftia pachyptila (50%)
2 1698 bp 59.60 1.00 103.53
ar11r2_scaffold_14192
Class: Gammaproteobacteria (60%)
5 2584 bp 57.12 1.00 101.24
ar11r2_scaffold_24067
Class: Gammaproteobacteria (66.67%)
3 1482 bp 55.87 1.00 101.22
ar11r2_scaffold_20388
Species: Thiocystis violascens (66.67%)
3 1762 bp 57.49 1.00 101.13
ar11r2_scaffold_28451
Species: Thiobacillus prosperus (50%)
2 1437 bp 60.96 1.00 100.63
ar11r2_scaffold_22562
Order: Chromatiales (66.67%)
3 2176 bp 54.83 1.00 100.51
ar11r2_scaffold_2225
Phylum: Proteobacteria (71.43%)
7 6821 bp 52.50 1.00 100.50
ar11r2_scaffold_23376
Order: Chromatiales (66.67%)
3 1682 bp 56.54 1.00 100.42
ar11r2_scaffold_14572
Species: Halothiobacillus neapolitanus (50%)
2 3009 bp 59.82 1.00 100.40
ar11r2_scaffold_30395
Species: BJP_IG2102_Gammaproteobacteria_62_140 (66.67%)
3 1351 bp 50.04 1.00 100.37
ar11r2_scaffold_28095
Order: Chromatiales (50%)
4 1630 bp 55.40 1.00 100.31
ar11r2_scaffold_31163
Species: BJP_IG2103_SUB10_Xanthomonadales_61_45 (50%)
2 1550 bp 55.10 1.00 100.26
ar11r2_scaffold_25104
Class: Gammaproteobacteria (100%)
3 2005 bp 56.01 1.00 100.25
ar11r2_scaffold_5375
Class: Gammaproteobacteria (75%)
4 3774 bp 56.65 1.00 100.24
ar11r2_scaffold_17445
Class: Gammaproteobacteria (66.67%)
6 2640 bp 55.45 1.00 100.23
ar11r2_scaffold_17897
Class: Gammaproteobacteria (100%)
4 3625 bp 58.90 1.00 100.22
ar11r2_scaffold_36812
Species: Candidatus Contendobacter odensis (50%)
2 1620 bp 60.12 1.00 100.18
ar11r2_scaffold_29943
Species: RBG_13_Deltaproteobacteria_49_15_curated (50%)
2 1303 bp 63.70 1.00 100.15
ar11r2_scaffold_24914
Species: Thiorhodococcus sp. AK35 (50%)
2 1532 bp 57.77 1.00 100.07
ar11r2_scaffold_31643
Species: Alkalilimnicola ehrlichii (50%)
2 1664 bp 58.35 1.00 100.06
ar11r2_scaffold_12525
Species: BJP_IG2102_Gammaproteobacteria_62_140 (50%)
2 2993 bp 64.08 1.00 100.03
ar11r2_scaffold_5784
Class: Gammaproteobacteria (80%)
5 3734 bp 60.12 1.00 100.03
ar11r2_scaffold_29696
Species: Thioflavicoccus mobilis (50%)
2 1608 bp 60.32 1.00 100.00
ar11r2_scaffold_20309
Species: Thiocapsa marina (50%)
2 1707 bp 53.90 1.00 100.00
ar11r2_scaffold_43381
Species: Thioalkalivibrio sulfidiphilus (50%)
2 1143 bp 60.54 1.00 100.00
ar11r2_scaffold_22733
Species: Halothiobacillus neapolitanus (100%)
2 2511 bp 54.96 1.00 100.00
ar11r2_scaffold_18826
Species: Nitrosomonas communis (100%)
1 1852 bp 56.26 1.00 99.95
ar11r2_scaffold_13786
Species: Halothiobacillus neapolitanus (100%)
1 2444 bp 54.87 1.00 99.92
ar11r2_scaffold_42703
Species: Nitrococcus mobilis (100%)
1 1051 bp 63.46 1.00 99.90
ar11r2_scaffold_3834
Phylum: Proteobacteria (66.67%)
6 4725 bp 55.94 1.00 99.89
ar11r2_scaffold_16432
Species: BJP_IG2102_Gammaproteobacteria_62_140 (100%)
1 1838 bp 57.56 1.00 99.89
ar11r2_scaffold_43770
Species: Nitrosococcus halophilus (100%)
1 835 bp 64.91 1.00 99.88
ar11r2_scaffold_27046
Genus: Candidatus Accumulibacter (50%)
4 1619 bp 55.16 1.00 99.88
ar11r2_scaffold_19213
Species: Ectothiorhodospira sp. PHS-1 (100%)
1 2052 bp 61.35 1.00 99.85
ar11r2_scaffold_34347
Species: Solemya velum gill symbiont (100%)
1 1328 bp 55.80 1.00 99.85
ar11r2_scaffold_23448
Species: Thiorhodovibrio sp. 970 (100%)
1 1821 bp 56.78 1.00 99.84
ar11r2_scaffold_39904
Species: endosymbiont of Tevnia jerichonana (50%)
2 1299 bp 54.35 1.00 99.77
ar11r2_scaffold_16026
Order: Xanthomonadales (66.67%)
3 2272 bp 56.43 1.00 99.69
ar11r2_scaffold_12235
Class: Gammaproteobacteria (66.67%)
3 2601 bp 50.56 1.00 99.65
ar11r2_scaffold_2252
Phylum: Proteobacteria (71.43%)
7 6293 bp 57.35 1.00 99.44
ar11r2_scaffold_6164
Class: Gammaproteobacteria (66.67%)
3 3536 bp 59.56 1.00 99.35
ar11r2_scaffold_1663
Class: Gammaproteobacteria (71.43%)
7 8049 bp 52.07 1.00 99.33
ar11r2_scaffold_1532
Class: Gammaproteobacteria (80%)
10 9475 bp 48.89 1.00 99.26
ar11r2_scaffold_3220
Class: Gammaproteobacteria (71.43%)
7 5268 bp 56.02 1.00 99.20
ar11r2_scaffold_4250
Species: Halothiobacillus neapolitanus (50%)
6 4419 bp 52.84 1.00 99.12
ar11r2_scaffold_12651
Species: Halothiobacillus neapolitanus (66.67%)
3 2608 bp 53.57 1.00 98.93
ar11r2_scaffold_12551
Class: Gammaproteobacteria (50%)
4 2567 bp 53.72 1.00 98.87
ar11r2_scaffold_24696
Class: Gammaproteobacteria (100%)
3 1588 bp 54.03 1.00 98.80
ar11r2_scaffold_31518
Species: Ectothiorhodospira sp. PHS-1 (50%)
2 1552 bp 55.61 1.00 98.78
Displaying items 1-50 of 453 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.