ggKbase home page

ar4r2_scaffold_4084_8

Organism: ALUMROCK_MS4_Thiothrix_nivea-related_50_537

near complete RP 42 / 55 MC: 3 BSCG 45 / 51 MC: 8 ASCG 12 / 38 MC: 4
Location: 5670..7661

Top 3 Functional Annotations

Value Algorithm Source
Type III secretion protein, HrcV family n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BWL4_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 70.6
  • Coverage: 687.0
  • Bit_score: 919
  • Evalue 1.80e-264
  • rbh
Type III secretion protein, HrcV family {ECO:0000313|EMBL:EIJ35757.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothri similarity UNIPROT
DB: UniProtKB
  • Identity: 70.6
  • Coverage: 687.0
  • Bit_score: 919
  • Evalue 2.50e-264
Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV similarity KEGG
DB: KEGG
  • Identity: 45.9
  • Coverage: 691.0
  • Bit_score: 584
  • Evalue 5.00e-164

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Thiothrix nivea → Thiothrix → Thiotrichales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1992
ATGCAGTCCGGTCAATCGCTTGCCTTCCTAGAATCGCTTACCCGTCGCAGCGACGTGGTATTGACGTTGTTAATCCTGTCGATCATCGCCATGATGATTTTACCCATGCCAACCTTGCTGCTCGACTTACTGATCGGCTTGAATATGGGTATTTCCATTTTGCTATTGATGGTGGCTATTTACATTCCCAGCCCGCTGGCTTTTGCCTCATTCCCTTCGGTATTGTTAATCACCACTTTGTTCCGGCTTTCACTGGGGATTGCCTCTACCCGTTTGATTTTGCTGGAAGCTGATGCGGGAAAAATTATTCAAACCTTTGGGGAATTCGTAGTCGGCGGCAATTTAATTGTGGGCTTGGTTATCTTTTTAATCATTACCATCGTGCAATTTATCGTGATTACCAAGGGTTCCGAACGGATTGCGGAAGTCAGTGCGCGGTTCTCGCTTGATGCCATGCCCGGTAAACAAATGAGTATTGACAGTGATATGCGTGCCGGGGTTATTACCCTTGCCGAGGCACGCCACCGCCGCGAAAACCTGACCCTCGAAAGTCGTTTGTTTGGCTCAATGGATGGCGCGATGAAATTCGTTAAAGGCGACGCCATTGCGGGGTTAATCATTATTCTGGTGAATATCATCGGCGGACTTTCGATTGGCACGCTGCAAAACGGCATGACAATGAGTGATGCATTGCAACTGATTACTTCCGGGATTATTGTGTCGCGGGTCAAAGTCGACGACGACAGCAATTTAGGCAGTGACATCGGTAAACAATTACTGGGGCAACCCAGTGCCTTGATCTCGGCGGCAGGCATTGTCGCGGCAATGGGGTTAGTACCCGGTTTTCCGACAACGGTATTCTTATTCTTAGGCATTTTGCTTGCCATTACCGGTTTTGCATTACGCAAAGCTCAAAATCGCATGGAGTTTGCTGCCAGCGAAGTCACCACGGTGATGGGACAAGAAGTTGCCAATACCGATTCATCCGCTGTGCCGGACAAAAATACGCTGGAAGACATGCACCCGCTGTCGCCGGTTTTAGTGGAATTACCCACACAAGCACGTGCCTTATTTTCACCGGAAATCCTCAGCCAACGCTTTACCCTGTTGCGCCGTGAGTTTTATCTGGATTTGGGCGTACCCATTCCCGGCATTAGTTTGCGGATTGTTAACTCGTTGGCAGCGGATGCCTACCGCATTTCAATTCGTGGCGTACCGGTAGCGCAAGGTGTGCTTAAAACACAACGCGGAACCACTAGCAACACCGAATTACCCAACGAAACCGCTGCTGCTACCGGCGCGGAATTGACCACCAGTAATCCGGCAAACGCACGCGAAACCCCGGATAATCTCCAGAGCATTCACAATCACCTTGCCTATTTACTGCGTAAACACGCGGCAGAATTTATTGGGATTCAGGAAATTCACACCCTGTACGCCAAGTTAGAGCAAGCAGGTTATCTGGAATTGGTGCGCGAAGCCCAACGCGCCACCAACAGCACCAAAACCGCTGATGTGTTGCGCCGCTTATTGAATGAAGGGGTGTCAGTACGCGATTTACGCCAGATTCTGGAAACGCTTGTCGAATTCGGCGAAGCAGAAAAAGACACGGGCATGTTAACCGAACGGGTGCGGATTAGCCTGAAGCGACAAATTTCCTACAGTTTCACCAATGGCACGGGCGTATTACCGGTGTATATGTTCGCGCCAGAAACCGAAAAGTTACTGCAAAACAATTTGCGCCAAACCCCGACCGGAGTATTTTTCGCGTTACCGCCGGAAGTCGCCCAGCAATTTACCAACACCTTGCAAGAGCTGGAAGCGCAACACAGTAGCAATACAGTGCGTCCGGTTATTCTCACCGGGCTGGAGTTACGTCGCCACGTGCGCCGCCATCTGGAAAGTACTTTCGGGCACATTCCGGTGTTATCGGTGCAAGAATTAACCTCGACCATTTCCCTTAACCCAATGGGCGAGATCCGACTCACATGA
PROTEIN sequence
Length: 664
MQSGQSLAFLESLTRRSDVVLTLLILSIIAMMILPMPTLLLDLLIGLNMGISILLLMVAIYIPSPLAFASFPSVLLITTLFRLSLGIASTRLILLEADAGKIIQTFGEFVVGGNLIVGLVIFLIITIVQFIVITKGSERIAEVSARFSLDAMPGKQMSIDSDMRAGVITLAEARHRRENLTLESRLFGSMDGAMKFVKGDAIAGLIIILVNIIGGLSIGTLQNGMTMSDALQLITSGIIVSRVKVDDDSNLGSDIGKQLLGQPSALISAAGIVAAMGLVPGFPTTVFLFLGILLAITGFALRKAQNRMEFAASEVTTVMGQEVANTDSSAVPDKNTLEDMHPLSPVLVELPTQARALFSPEILSQRFTLLRREFYLDLGVPIPGISLRIVNSLAADAYRISIRGVPVAQGVLKTQRGTTSNTELPNETAAATGAELTTSNPANARETPDNLQSIHNHLAYLLRKHAAEFIGIQEIHTLYAKLEQAGYLELVREAQRATNSTKTADVLRRLLNEGVSVRDLRQILETLVEFGEAEKDTGMLTERVRISLKRQISYSFTNGTGVLPVYMFAPETEKLLQNNLRQTPTGVFFALPPEVAQQFTNTLQELEAQHSSNTVRPVILTGLELRRHVRRHLESTFGHIPVLSVQELTSTISLNPMGEIRLT*