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ar4r2_scaffold_4914_13

Organism: ALUMROCK_MS4_Thiothrix_nivea-related_50_537

near complete RP 42 / 55 MC: 3 BSCG 45 / 51 MC: 8 ASCG 12 / 38 MC: 4
Location: 10605..13205

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase similarity UNIPROT
DB: UniProtKB
  • Identity: 89.7
  • Coverage: 871.0
  • Bit_score: 1543
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BWS8_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 89.7
  • Coverage: 871.0
  • Bit_score: 1543
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' similarity KEGG
DB: KEGG
  • Identity: 69.7
  • Coverage: 869.0
  • Bit_score: 1185
  • Evalue 0.0

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Taxonomy

Thiothrix nivea → Thiothrix → Thiotrichales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2601
ATGGTGTTTGCGGATCCGATGGAAGCGCAACGTGCGTATGAAACTGGCAATGCCTCTTTGCACGCCAAAGTAAAAGTACGCATTACTGATAGCATCAAAGACGAAGACGGTGAATTGATCAAGCGTACCCGTTTGATTGATACCACGGTTGGACGCTCATTGCTGACTAGCATTATGCCGGAAGGTTTGCCTTTTGAGCTCTTCAATACCGTATTGAAGAAAAAAGCGATTTCCAAGCTGATTAATGAATCCTACCGTCGGGTGGGTTTGAAATCAGCGGTTATCTTCGCTGACCAACTGATGTACACCGGGTATCGTTACGCTACGCGCTCCGGCGTTTCTTTCTGTTCCGACGATATGATGATTCCTGAAAAGAAAGTCGAATTGTTGGCGGAAGCTGATGCAGCGGTATTGGAAATTCAAAACCAGTTTGCCAGTGGTTTAGTGACTCAGGGCGAACGTTACAACAAGGTCGTTGACATCTGGGCGAGTACCAATGAAAAAGTCGCGAAAGCGATGATGGAAAAAATTGGTAAGCAAGAAGTTGTCGATGCCGAAGGTAAAACGGTTTACCAAGAATCTTTCAACTCCATCTACATGATGGCGGATTCCGGGGCGCGGGGTTCCGCAGCCCAGATTCGTCAGTTGGCAGGGATGCGGGGTTTGATGGCGAAACCGGATGGTTCCATCATTGAAACACCGATTACCTCCAACTTCCGCGAAGGTTTGAGCGTATTGCAATACTTTATCTCGACGCATGGTGCGCGGAAAGGTTTGGCGGATACGGCACTGAAAACCGCGAACTCCGGTTACTTGACGCGTCGTTTGGTCGATGTGGCGCAAGACATGGTTGTTACTATTGATGACTGTGGCACGACCAGCGGTATCCTGATGCGTCCTATCATCGAAGGTGGTGATGTGGTCGAAGCGTTAGGTCGTGTGGTTGCGCAAGATGTAACCAAGGGCGATGAAGTGCTGATTCCTGCGGGAACCTTCCTAGACGAAGGTTGGGTCAAGCAGATTGATGCGATGGCGATTGACGAAATCGTGGTGCGTTCAGCAATTACGTGCGAAACCCGTTACGGTGTTTGTAAGCATTGCTACGGACGTGATTTAGCACGTGGGCATTTGGTGAACAAGGGTGAGGCGGTCGGCGTTATTGCGGCGCAATCCATCGGTGAACCGGGTACTCAGTTGACCATGCGTACCTTCCATATCGGGGGTGCGGCGAGCCGGTCGGCAGCGGAAAACAGTATTTGCGTTAAATCCTCTGGTCAAGCGCATCTGATTAACGTTAAAACTGTGCGTAACAAAGAAAACAAGCTGGTGGTGGTATCCCGCTCCGGTGAGTTGGGTGTTGTCGATACTGATGGGCGTGATAAAGAACGTTACAAGCTGACTTACGGTGCGATTTTGTCGGTTGACCAATACGCGCAAGTACAAGCTGGTCAAGAAGTGGCGACATGGGATCCGCATACCCACCCGATTATTTCTGAGGTAACGGGGCGTGTCGACTTCAGTGACTTTATTGATAACGTGACCGTTCAAACCAAAGTCGATGAAATGACCGGTTTGGCTTCCATTGAAATCATTGATCCACGTAACCGTCCTGCGGCGGGTCGTGAATTGCGTCCAACCGTGCGCTTACTGGATTTGAATGGCGATAGCGTATTCTTTGAAGGTACTAAGATTCCAGTTCAATATCCGCTGCCAGCCGGGGCGATTGTTAGCTCTACCAATGGTGCGAGTGTGCAAGTTGGTGAAGTTATCGCACGTTTGCCACAAGCGTCCTCTAAGACGCGTGACATCACGGGTGGTTTGCCACGGGTAGCTGACTTGTTTGAAGCGCGTAAACCGAAAGACGGTGCGATTTTGGCGGAAAAAACCGGCACAATCTCCTTTGGTAAGGAAACTAAAGGTAAGCAGCGCGTCATCATCACCAGTGAAGACGGTGAGCAGTACGAAGAGCTGATCCCGAAATGGCGTAATTTGGATGTGTTCGAGGGTGAGAAAGTCAACCGTGGTGAAACCATTGCTGACGGCGAACCTAATCCACATGACATTCTACGTTTGCTGGGTGCGCGTGCGTTGGCAGAGTACCAGGTCAAAGAGATCCAAGACGTTTATCGTCTGCAAGGTGTTAAAATCAATGACAAACACATTGAAGTTATTGCCCGTCAGATGATGCGTAAAGTGGAAGTCATTGATCCGGGTGATAGTAACTTCTTACGTGGCGAGCAGACTGATTTCTGGCGCGTTGTGGAAGAAAACAAACGTTTGGATAAAGAAGGTAAGTTGCGGATTATTTTTGAGCGTTTGCTCATGGGTATTACCAAAGCCTCGTTGGTGACGGATTCCTTCATATCCGCCGCTTCTTTCCAAGAAACAACCCGTGTACTGACAGAAGCTGCGGTGCGTGGGGCACGTGACGAATTACGTGGCTTGAAGGAAAACGTTATCGTGGGTCGTCTGATTCCGGCAGGAACCGGTTTGGCGTATCACGATGACCGTCGCAGTCAACGTAATGAGTTCGCTTATGAACGCCCCGCGCCCACCGAAACGATCAGTTTTGGTGAGCCGATGGACATGGATTCTGATTAA
PROTEIN sequence
Length: 867
MVFADPMEAQRAYETGNASLHAKVKVRITDSIKDEDGELIKRTRLIDTTVGRSLLTSIMPEGLPFELFNTVLKKKAISKLINESYRRVGLKSAVIFADQLMYTGYRYATRSGVSFCSDDMMIPEKKVELLAEADAAVLEIQNQFASGLVTQGERYNKVVDIWASTNEKVAKAMMEKIGKQEVVDAEGKTVYQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITSNFREGLSVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDMVVTIDDCGTTSGILMRPIIEGGDVVEALGRVVAQDVTKGDEVLIPAGTFLDEGWVKQIDAMAIDEIVVRSAITCETRYGVCKHCYGRDLARGHLVNKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAENSICVKSSGQAHLINVKTVRNKENKLVVVSRSGELGVVDTDGRDKERYKLTYGAILSVDQYAQVQAGQEVATWDPHTHPIISEVTGRVDFSDFIDNVTVQTKVDEMTGLASIEIIDPRNRPAAGRELRPTVRLLDLNGDSVFFEGTKIPVQYPLPAGAIVSSTNGASVQVGEVIARLPQASSKTRDITGGLPRVADLFEARKPKDGAILAEKTGTISFGKETKGKQRVIITSEDGEQYEELIPKWRNLDVFEGEKVNRGETIADGEPNPHDILRLLGARALAEYQVKEIQDVYRLQGVKINDKHIEVIARQMMRKVEVIDPGDSNFLRGEQTDFWRVVEENKRLDKEGKLRIIFERLLMGITKASLVTDSFISAASFQETTRVLTEAAVRGARDELRGLKENVIVGRLIPAGTGLAYHDDRRSQRNEFAYERPAPTETISFGEPMDMDSD*