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ar4r2_scaffold_4947_3

Organism: ALUMROCK_MS4_Thiothrix_nivea-related_50_537

near complete RP 42 / 55 MC: 3 BSCG 45 / 51 MC: 8 ASCG 12 / 38 MC: 4
Location: comp(631..1635)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoS n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BYV6_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 79.5
  • Coverage: 336.0
  • Bit_score: 510
  • Evalue 1.70e-141
  • rbh
RNA polymerase sigma factor RpoS {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma S {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma-38 {ECO:0000256|HAMAP-Rule:MF_00959}; TaxID=870187 species="Bacteria; Proteobacteri similarity UNIPROT
DB: UniProtKB
  • Identity: 79.5
  • Coverage: 336.0
  • Bit_score: 510
  • Evalue 2.30e-141
RpoD subfamily RNA polymerase sigma-70 subunit similarity KEGG
DB: KEGG
  • Identity: 62.5
  • Coverage: 325.0
  • Bit_score: 399
  • Evalue 8.90e-109

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Taxonomy

Thiothrix nivea → Thiothrix → Thiotrichales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1005
ATGCCAAGACCACAGACTCAAATACACGACAAAGCGGAACCTTTTGTCGCGTTTGATACCACCGAAGACGATGATCTGTGCGCCCTAGAAACTGATGAAGAAACGATACTGGATGATGACAGCAGTGATGTTGTCGCCACTAGCGCAACGTTTACCGTCAGCTCCCATGAGATGGATGCCACGCAGATGTATTTGCGTGAAATCGAGTTTTCGTCCTTGTTGACCCCGGAAGAGGAAGTCCGTTACGGTCGGCTGGCTCGTCAGGGTGATGAGCTGGGGCGTAAGAAGATGATTACCTGCAATTTGCGTTTGGTCGTCAAAATCGCCCGCCGTTACATGGGGCGTGGTTTGCCGCTACCGGATTTGATTGAGGAAGGAAATCTCGGTCTGATTCACGCGGTGGAAAAGTTTGACCCTGAGCGCGGTTTTCGCTTTTCGACCTATGCCACTTGGTGGATTCGCCAAAACATTGAACGGGCATTGATGAATCAAACCCGTACCATCCGTTTGCCGATTCATGTGAATAAAGAGCTGAATGCTTACTTGCGTAAGATGCGTGAAATGACTCAGAAACTGGGTTATGAACCGTCTTTGCAGGAAATGGCAGTGGTGATGGATAAACCCGTTGAAGCTCTGCGTAAGTTGCTGGATTTTAACGAGCGCATTACCTCACTGGATATTCCGGTCGGCAAAGACGGTGATAGCTTATTGGTTGATTTCGTTAGCAATGACCACGATGATGATCCCGCCGGTAAGCTGGAAGATGAAGACATTACCCAGTCCGTGGATAGCTGGCTGGAACAGTTGGAGTTCAAACAGCAGGAAGTGATTGTGCGCCGCTTTGGTTTGCATGGTCATGAGCGTGCCACGTTGGAACAGGTCGGCGAAGCCTTGGGGTTAACCCGTGAGCGCGTGCGTCAAATCCAAATGGACGCACTAAAACGCCTGCGCCGTATCCTTGAAAACAAGGGTTTATCCGGCGAAAGCTTGTTAGGTTTTAGTTAA
PROTEIN sequence
Length: 335
MPRPQTQIHDKAEPFVAFDTTEDDDLCALETDEETILDDDSSDVVATSATFTVSSHEMDATQMYLREIEFSSLLTPEEEVRYGRLARQGDELGRKKMITCNLRLVVKIARRYMGRGLPLPDLIEEGNLGLIHAVEKFDPERGFRFSTYATWWIRQNIERALMNQTRTIRLPIHVNKELNAYLRKMREMTQKLGYEPSLQEMAVVMDKPVEALRKLLDFNERITSLDIPVGKDGDSLLVDFVSNDHDDDPAGKLEDEDITQSVDSWLEQLEFKQQEVIVRRFGLHGHERATLEQVGEALGLTRERVRQIQMDALKRLRRILENKGLSGESLLGFS*