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ar4r2_scaffold_5206_8

Organism: ALUMROCK_MS4_Thiothrix_nivea-related_50_537

near complete RP 42 / 55 MC: 3 BSCG 45 / 51 MC: 8 ASCG 12 / 38 MC: 4
Location: comp(5132..5575)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BV15_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 78.2
  • Coverage: 147.0
  • Bit_score: 240
  • Evalue 1.40e-60
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EIJ35208.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source=" similarity UNIPROT
DB: UniProtKB
  • Identity: 78.2
  • Coverage: 147.0
  • Bit_score: 240
  • Evalue 2.00e-60
putative RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 45.4
  • Coverage: 141.0
  • Bit_score: 131
  • Evalue 1.50e-28

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Taxonomy

Thiothrix nivea → Thiothrix → Thiotrichales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 444
GACGATTTGGCGCAAGCGGCTGATATTGTGGATGAAGCTATGTTTGATATTTGGCGGTCAGCCGGTAGTTTTGCCGGACGCTCCAAGCCATCAACATGGATTTACTCCATTGCCCGCAACAAAGTGATTTCGTGGTTACGTAAAACCTCGGAAGTCGGGCTAGATGATGAATCCTTGTTGGAGGCGTTGGTTGATCCCGCCGCTACGCCCCATGAGGAGTTGGCAATGAATGACATGAAGCAGCAGTTGCTGCGGCTGATAGACCAATTGAGCGATGAACACCGCGAGGTCTTGAGGCTTACTTACTTTGAGGATTTATCTGTCAAAGAAGTCGCTGATTTATTGGGGATTTCGGAAAATACTGTCAAAACACGTATGTTCTATGCGCGAAAACGCATGGCGCAGTTACTGGATAAGGCAGGCATTACTAACGTTGACTTGTAA
PROTEIN sequence
Length: 148
DDLAQAADIVDEAMFDIWRSAGSFAGRSKPSTWIYSIARNKVISWLRKTSEVGLDDESLLEALVDPAATPHEELAMNDMKQQLLRLIDQLSDEHREVLRLTYFEDLSVKEVADLLGISENTVKTRMFYARKRMAQLLDKAGITNVDL*