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ar4r2_scaffold_5376_2

Organism: ALUMROCK_MS4_Thiothrix_nivea-related_50_537

near complete RP 42 / 55 MC: 3 BSCG 45 / 51 MC: 8 ASCG 12 / 38 MC: 4
Location: 924..2249

Top 3 Functional Annotations

Value Algorithm Source
Type III secretion apparatus protein, YscD/HrpQ family n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BWM3_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 53.4
  • Coverage: 453.0
  • Bit_score: 471
  • Evalue 1.10e-129
  • rbh
Type III secretion apparatus protein, YscD/HrpQ family {ECO:0000313|EMBL:EIJ35766.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" s similarity UNIPROT
DB: UniProtKB
  • Identity: 53.4
  • Coverage: 453.0
  • Bit_score: 471
  • Evalue 1.60e-129
yfhA; sigma-54 dependent transcription regulator similarity KEGG
DB: KEGG
  • Identity: 32.5
  • Coverage: 117.0
  • Bit_score: 64
  • Evalue 8.90e-08

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Taxonomy

Thiothrix nivea → Thiothrix → Thiotrichales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1326
ATGTCAGTCCAACACACGGCGTTTATTCTTAAGGTGCTGAGCGGGATTAACGCTGGTGCATCCGTTCGGTTGAAAACAGGCAGTTCCATCATTGGGCGTTCGATGAACTGCGATATTATTTTGCACGATGAGGCCATTGCTGATCAGCATGTGCATTTATCGGTGACGGAAACAGGCATTACCTTGCATCCGTTGGCACGCCCGGTATTTGTCGAGTCGACAGAGATTGCGGTCGATGAGATGGAGTTAAAGCCCTATCAAAGCGTGCGCGTTGGTAGTGTCGAGTTTATGGTGGTTGATGCTAAAAGTGGCAATGCGGCTATGCATACACGCGGCACTGATGCCGTGTTGGCTGGGCAGGTACAAGTGCCAACGTCACAAACACGCATTGGTAGTGACGCTAAAACGCCCACATCGACATCCGCATGGGGAACCAAAACCTATTTAGTCTTGGGTTTGGGATTGTTGCTGCTAGGCAATCTCATCTTCTTTTATCCCCAATTAGCAGCGGTATTGGAACGCAGTGGCGTAGTTGCCTCCCCGGAAACGCGAGCGACGGCATGGTTGGCAAAGTTAGGGCGTGACGATTTTACCTTACAGGCCGCACCCGATGGCTCGGTAAGTCTGCGTGGTTATAGTCGCACGACGGCGGAAAGAAATGCCTTGATGCGTCAAATGCAAGAAGCGGGCATTCAAGCGAAGCTGTCGATTTGGTCACAAGAGGAAATGGTTACTAGTGCGGGAACCATTGCTCGTTCCTTGGATGAGCCGGGCATCAAGGTCAGTGCTGGTGAGGCGGTGGGTAGTCTAAAAGTGCAGGGTTTTGTGAGTAAATCGGCTGCATGGGATCGGATTCGCGGAGTGATTCTTGCTGACGTGGGTGGTATTCAGTCAATTGACGATGACAAATTGCAGTCGATGGACGGTTATTTGGCTTCCTTTGTACAGTTCGTCGAAAAAAATGGACTGTCTGGCAGGCTTAAAATTACTACTGACGGTAAGCGCGTTATAGTTAAAGGCGAGTTAACACAGCAGGAAATCGAAAAGATTGGCAGCCTACGTAAGGAGTTTATTGACACTTACGGCGATGAGCCAGCGATTCAACTCGAAGTGGTTGACGTTAGAACGAAAATTAAGCTGGCGATACGCAGTGCCAGCGTAGGGAAAGTGCCATTTCTGGTGGCCAAGGACGGTAAGAAATACATGGAAGGTTCAGCAATAGGCGAAAATTATTTTGTAAAATCTATAAGACCTGATCATGTTGTATTGGTTAACAAAGGGATGGAAATCCCATTCTACTACGGTATTGAGGAGGGGAGGAAATGA
PROTEIN sequence
Length: 442
MSVQHTAFILKVLSGINAGASVRLKTGSSIIGRSMNCDIILHDEAIADQHVHLSVTETGITLHPLARPVFVESTEIAVDEMELKPYQSVRVGSVEFMVVDAKSGNAAMHTRGTDAVLAGQVQVPTSQTRIGSDAKTPTSTSAWGTKTYLVLGLGLLLLGNLIFFYPQLAAVLERSGVVASPETRATAWLAKLGRDDFTLQAAPDGSVSLRGYSRTTAERNALMRQMQEAGIQAKLSIWSQEEMVTSAGTIARSLDEPGIKVSAGEAVGSLKVQGFVSKSAAWDRIRGVILADVGGIQSIDDDKLQSMDGYLASFVQFVEKNGLSGRLKITTDGKRVIVKGELTQQEIEKIGSLRKEFIDTYGDEPAIQLEVVDVRTKIKLAIRSASVGKVPFLVAKDGKKYMEGSAIGENYFVKSIRPDHVVLVNKGMEIPFYYGIEEGRK*