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ar4r2_scaffold_6221_6

Organism: ALUMROCK_MS4_Thiothrix_nivea-related_50_537

near complete RP 42 / 55 MC: 3 BSCG 45 / 51 MC: 8 ASCG 12 / 38 MC: 4
Location: 4982..5293

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BTH8_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 76.0
  • Coverage: 104.0
  • Bit_score: 176
  • Evalue 1.00e-41
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DS similarity UNIPROT
DB: UniProtKB
  • Identity: 76.0
  • Coverage: 104.0
  • Bit_score: 176
  • Evalue 1.40e-41
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 52.7
  • Coverage: 93.0
  • Bit_score: 117
  • Evalue 2.10e-24

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Taxonomy

Thiothrix nivea → Thiothrix → Thiotrichales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 312
ATGTTTAGTCAGTATTTTCGTTTTAACCGTCTCGACCAGCAGTTGTCGGAACACCGCGCCAAGCTGCATCGCATGGCAGTGGCATGGTGTGGCGATAGCGCGTTAGCCGACGATCTGGTGCAAGACACCCTTGCAAAAGCCCTAGAAAAACAAGAACAACTGAAAGATGAAGCGCGTTTAGGCGCGTGGCTGTACAAAATCCTCCACAACTGCTGGATGGAGCATTTGCGCACCCAAAAGCCGACGCTGGACATCGACGACATGGAGCTAACCTGTACGGATTGCCCCGAAAAACACTTCGCCGATGATCAA
PROTEIN sequence
Length: 104
MFSQYFRFNRLDQQLSEHRAKLHRMAVAWCGDSALADDLVQDTLAKALEKQEQLKDEARLGAWLYKILHNCWMEHLRTQKPTLDIDDMELTCTDCPEKHFADDQ