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ar4r2_scaffold_9581_1

Organism: ALUMROCK_MS4_Thiothrix_nivea-related_50_537

near complete RP 42 / 55 MC: 3 BSCG 45 / 51 MC: 8 ASCG 12 / 38 MC: 4
Location: comp(106..681)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BPI1_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 86.4
  • Coverage: 191.0
  • Bit_score: 334
  • Evalue 9.30e-89
  • rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DS similarity UNIPROT
DB: UniProtKB
  • Identity: 86.4
  • Coverage: 191.0
  • Bit_score: 334
  • Evalue 1.30e-88
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 77.0
  • Coverage: 191.0
  • Bit_score: 295
  • Evalue 1.30e-77

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Taxonomy

Thiothrix nivea → Thiothrix → Thiotrichales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 576
ATGGGCGAGAAGCCTACTGATCTCGAACTGGTTCAACGGATCCAGACCGGGGATAAAAAATCGTTTGACGTTCTGGTGCTTAAATACCAGCACAAGGTTGTTAGCCTAGTGCTGCGTTATGTGCATGATCATGATACTGCGCAGGATGTGGCGCAAGAAGCCTTTATTAAAGCCTATCGTGGCCTTAAGAATTTCCGTGGAGAAAGTGCGTTTTACACTTGGTTGTACCGCATTGCGATCAATACAGCGAAAAATCATCTGGTTTCACAGGGTCGTCGAATACCGGATACTGATATTGATGCAGAAGAAGCGGAACAATTTGGGGGGGAGTCCGCTCTAAAGGAATACGCAACGCCTGAACATGAATTATTGACGGCGGAAATCCAGCGGGTCGTTAATCGGGCGATTGATGATTTACCCGAAGATTTGCGCACAGCCATCATGTTGCGTGAACTGGAAGGGATGAGTTACGAAGAAATTGCGGTGACAATGGAATGTCCGATAGGTACTGTGCGTTCGCGGATTTTCCGTGCGCGTGAGTCAATTGATAAGGTCTTGAGGCCATTGCTGAGTTAA
PROTEIN sequence
Length: 192
MGEKPTDLELVQRIQTGDKKSFDVLVLKYQHKVVSLVLRYVHDHDTAQDVAQEAFIKAYRGLKNFRGESAFYTWLYRIAINTAKNHLVSQGRRIPDTDIDAEEAEQFGGESALKEYATPEHELLTAEIQRVVNRAIDDLPEDLRTAIMLRELEGMSYEEIAVTMECPIGTVRSRIFRARESIDKVLRPLLS*