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ar4r2_scaffold_12139_2

Organism: ALUMROCK_MS4_Thiothrix_nivea-related_50_537

near complete RP 42 / 55 MC: 3 BSCG 45 / 51 MC: 8 ASCG 12 / 38 MC: 4
Location: comp(439..942)

Top 3 Functional Annotations

Value Algorithm Source
Helix-hairpin-helix DNA-binding, class 1 n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BY51_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 53.9
  • Coverage: 154.0
  • Bit_score: 139
  • Evalue 3.80e-30
Helix-hairpin-helix DNA-binding, class 1 {ECO:0000313|EMBL:EIJ36294.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothr similarity UNIPROT
DB: UniProtKB
  • Identity: 53.9
  • Coverage: 154.0
  • Bit_score: 139
  • Evalue 5.40e-30
helix-hairpin-helix DNA-binding protein similarity KEGG
DB: KEGG
  • Identity: 34.2
  • Coverage: 187.0
  • Bit_score: 75
  • Evalue 1.90e-11

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Taxonomy

Thiothrix nivea → Thiothrix → Thiotrichales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 504
ATGGAACAAGACATTTCTAATGTAAAGTACGTCGGTCAAGCCACTGCCACCCGTTTAGCCGAACATGGCATCACCACCATTGAGCAACTCGCGGCAATGGATGTTGAAGTATTAGCAGCGATTCCGGGGATTGGTGCAACCACCGCGCCGCTGATGTTAGCCAGCGCACAGGCGTTACTGCCCACAACGGCAAACGAAGCTGAAGCCGAAGAAGTTGCACCTGTTACGTCAACCGATGAGCCGGTTTTAGCAGCGGAAACAGTATTGGAAGAAGCCGATGATGATGTCAGTGATGACGCATTTGCTGAGGAAGAATCTGCTGAGGTGTCTGACAAAAAAGCGAAAAAGGCCGATAAAAAAGCCAAAAAAGCTCTGAAAAAAGCCGCAAAGAAAGCTAAAAAACAGGCAAAAGAAGCCAAGAAAGCCGAACGTAAAGCTGCGAAAAAGGCCGATAAAAAAGCCAAGAAAGCTGCTAAAAAGGCAGCAAAAGCCGCTAAAGCATAA
PROTEIN sequence
Length: 168
MEQDISNVKYVGQATATRLAEHGITTIEQLAAMDVEVLAAIPGIGATTAPLMLASAQALLPTTANEAEAEEVAPVTSTDEPVLAAETVLEEADDDVSDDAFAEEESAEVSDKKAKKADKKAKKALKKAAKKAKKQAKEAKKAERKAAKKADKKAKKAAKKAAKAAKA*