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ar4r2_scaffold_15521_4

Organism: ALUMROCK_MS4_Thiothrix_nivea-related_50_537

near complete RP 42 / 55 MC: 3 BSCG 45 / 51 MC: 8 ASCG 12 / 38 MC: 4
Location: comp(1125..1913)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-54 factor n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BR35_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 84.7
  • Coverage: 262.0
  • Bit_score: 445
  • Evalue 5.10e-122
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea similarity UNIPROT
DB: UniProtKB
  • Identity: 84.7
  • Coverage: 262.0
  • Bit_score: 445
  • Evalue 7.20e-122
DNA-directed RNA polymerase specialized sigma subunit, sigma54 similarity KEGG
DB: KEGG
  • Identity: 60.5
  • Coverage: 258.0
  • Bit_score: 321
  • Evalue 3.10e-85

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Taxonomy

Thiothrix nivea → Thiothrix → Thiotrichales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 789
CAGCTCGTCGAAAAACATCTGGACTTAATGGAACGACGCGATTATAAAGAAATACAGAAAAGACTAAAAATAGATCAGAATGATTTGGAAGGCATGATCGTTTTGTTGCGTAGCTTGCAACCCCGACCTGGCAGTGCTTTTTCTAATTCTACCCCTGACTATATCGTTCCTGATGTTTTTGTACGCAAGTTTAAAGGACAGTGGGTGGTTTCGTTAAATGCTCAAGTAACGCCTAGCTTACAAATCAATCAGTATTACGCTGACATGCTCGGTCATGTCAAAAATGACAGTGATTCCAGCTATTTCAAGACCAATCTGCAACAAGCCCGCTGGCTGATCCGTAGTGTGGAAAGCCGTAACAGCACCTTACTCGGTGTTGCAAAAGCAATTGTTGATCGTCAGAGTGCTTTCATGCAATATGGGGAACAGGCGATGAAGCCGTTAGTACTCAGGGATATTGCAGAAGAGTTAGAAATGCACGAGTCCACCATCTCCCGCGTCACCACCAGTAAATACATGCACACCCCGCGCGGTGTCTTCGAGTTCAAGTACTTTTTTTCCAGCCAAGTCGACACCGACACTGGTTCCAGTTGTTCATCAACCGCAATCCGAGCCATGCTCAAAAAGCTGATTGCAGAGGAAAGTCCAGCAACCCCCCTAAGCGATAATCAATTGACGAATCTGCTGAATCAGCAGGGCATCAACGTGGCACGGCGAACCGTAGCCAAGTACCGTGAAGCAATGTCTATCGCTCCATCCCATGAGCGTAAGGCTTTGCTTCCGAGCTGA
PROTEIN sequence
Length: 263
QLVEKHLDLMERRDYKEIQKRLKIDQNDLEGMIVLLRSLQPRPGSAFSNSTPDYIVPDVFVRKFKGQWVVSLNAQVTPSLQINQYYADMLGHVKNDSDSSYFKTNLQQARWLIRSVESRNSTLLGVAKAIVDRQSAFMQYGEQAMKPLVLRDIAEELEMHESTISRVTTSKYMHTPRGVFEFKYFFSSQVDTDTGSSCSSTAIRAMLKKLIAEESPATPLSDNQLTNLLNQQGINVARRTVAKYREAMSIAPSHERKALLPS*