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ar4r2_scaffold_22686_1

Organism: ALUMROCK_MS4_Thiothrix_nivea-related_50_537

near complete RP 42 / 55 MC: 3 BSCG 45 / 51 MC: 8 ASCG 12 / 38 MC: 4
Location: comp(1..1380)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BZ90_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 86.6
  • Coverage: 461.0
  • Bit_score: 782
  • Evalue 2.40e-223
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thio similarity UNIPROT
DB: UniProtKB
  • Identity: 86.6
  • Coverage: 461.0
  • Bit_score: 782
  • Evalue 3.30e-223
RNA polymerase sigma-70 subunit RpoD similarity KEGG
DB: KEGG
  • Identity: 65.7
  • Coverage: 464.0
  • Bit_score: 587
  • Evalue 3.20e-165

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Taxonomy

Thiothrix nivea → Thiothrix → Thiotrichales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1380
GTCTATGAACATGCCCCCGATGCGGATTCGCTGTTATTAAACGACGAAGCTGTGCAGGCTGACGATGAAGCTGCTGAGGAAGCCGCTGCTGCGTTAGCCAACGTCGACGGTGACTTTGGGCGCACCACCGACCCCGTGCGGATGTATATGCGCGAAATGGGCACAGTTGAGCTATTGACCCGCGAAGGCGAAATTCAAATCGCGATCCGTATTGAGGAAGGTCTGAATGAAATTCTGCGAGCGTTAGCACAATACCCTGCATCAACCGAAATTCTGCTGGAAAAAGCCGATAAAATTGACTCTGAAGAAGTCCGTTTAACCGACGTTATCAATGGCTTCGTAAACCCGGATGAGGACTTGGCTACCGCTTTCCAAGCAACCGTGGATGAAACGGATTTGGACGCTAAAGCCGAAAGCGATGACGATGCCGCCGTTGTTGACGAAGACGAAGACGACGTAGCCGACCCCGTTGATACCGGCCCTGATCCTGAAGAAGCACGTTTGAAGTTTGCTGAGTTGCGTGAACTTTACGAAACCGCGAAAAATGCTTCCAACGACAATAACGCACTGGCTTACACCACTGCGCGTGATGCTTTGGCTGCGAAATTCATGGAATTCCGTTTAGCCCAACCAATCATTGAGCAATTAACGGTACAACTTAACGAAATTGTTGACCGTATTCGCCAAAATGAACGCCATATCATGAAGTTATGCGTTCAAAAAGGCGGGATGGCACGCCAAGGTTTCATTGACAGCTTCCCGCAAAATGAAACGGATTTGGAATGGCTCAACCGTTATTGCAGCAGCAAGCGTGGCGATCATGCACGTCTGTTGAATTTGTTGCCCAAAGTTCATGAAGCACAACAGCAATTGCTGGAAATTGAGCGCGAATGCAATTTAAGCATTCCTCAGATCAAAGACATTAACCGCAATATGTCGGTTGGCGAAGCCAAAGCACGCCGCGCCAAGAAAGAAATGGTGGAAGCCAACTTACGTTTGGTTATCTCGATTGCTAAGAAATACACCAACCGTGGCCTGCAATTCTTGGATCTGATCCAAGAAGGTAACATTGGTTTGATGAAGGCCGTTGATAAATTTGAATACCGTCGTGGTTACAAATTCTCAACTTACGCCACTTGGTGGATTCGTCAGGCGATTACCCGTTCCATAGCAGATCAGGCACGCACCATCCGTATTCCGGTACACATGATCGAAACCATCAACAAGCTCAATCGCATTTCGCGCCGCTTGTTGCAAGAAATGGGACGCGAGGCAACACCTGAAGAATTGGCTGAAGCAATGGAAATGCCGGAAGATAAAATCCGCAAAGTCCTGAAAATTGCTAAAGAACCGATTTCAATGGAAACCCCGATTGGTGAT
PROTEIN sequence
Length: 460
VYEHAPDADSLLLNDEAVQADDEAAEEAAAALANVDGDFGRTTDPVRMYMREMGTVELLTREGEIQIAIRIEEGLNEILRALAQYPASTEILLEKADKIDSEEVRLTDVINGFVNPDEDLATAFQATVDETDLDAKAESDDDAAVVDEDEDDVADPVDTGPDPEEARLKFAELRELYETAKNASNDNNALAYTTARDALAAKFMEFRLAQPIIEQLTVQLNEIVDRIRQNERHIMKLCVQKGGMARQGFIDSFPQNETDLEWLNRYCSSKRGDHARLLNLLPKVHEAQQQLLEIERECNLSIPQIKDINRNMSVGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRRLLQEMGREATPEELAEAMEMPEDKIRKVLKIAKEPISMETPIGD