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ar4r2_scaffold_2020

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_2020_1
unknown

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2..118
DNA (117bp) protein (39aa)

This feature has no annotations

ar4r2_scaffold_2020_2
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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118..2169
DNA (2052bp) protein (684aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31EQ8_THICR rbh
diguanylate cyclase/phosphodiesterase rbh
Tax=CG_Thiomicrospira_01
ar4r2_scaffold_2020_3
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2166..3533)
DNA (1368bp) protein (456aa)
Putative uncharacterized protein n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31EF1_THICR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB42472.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
ar4r2_scaffold_2020_4
Methylophaga nitratireducenticrescens, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3565..5622)
DNA (2058bp) protein (686aa)
ATP-dependent DNA helicase RecG n=1 Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XN41_METNJ rbh
ATP-dependent DNA helicase RecG rbh
Methylophaga nitratireducenticrescens strain JAM1, complete genome {ECO:0000313|EMBL:AFI85810.1}; TaxID=754476 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM; 25689 / JAM1).;"
ar4r2_scaffold_2020_5
bacterium UASB270, Bacteria

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comp(5628..6002)
DNA (375bp) protein (125aa)
twitching motility protein PilT n=1 Tax=Desulfurobacterium sp. TC5-1 RepID=UPI0003B40649
ANL34 protein {ECO:0000313|EMBL:GAK56141.1}; TaxID=1499967 species="Bacteria.;" source="bacterium UASB270.;"
PilT protein domain-containing protein
ar4r2_scaffold_2020_6
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5999..6226)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DCS8_THICA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG31664.1}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
ar4r2_scaffold_2020_7
Photobacterium damselae, Photobacterium, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6343..6864)
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Vibrio cyclitrophicus RepID=UPI00029ADFCF
Uncharacterized protein {ECO:0000313|EMBL:KJF83670.1}; TaxID=85581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium.;" source="Photobacterium damselae subsp. damselae (Listonella damsela).;"
hypothetical protein
ar4r2_scaffold_2020_8
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(6879..8411)
DNA (1533bp) protein (511aa)
Cobalamin biosynthesis CobT VWA domain protein n=1 Tax=Vibrio sp. HENC-03 RepID=K5VP24_9VIBR
Uncharacterized protein {ECO:0000313|EMBL:ACE06262.1}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
hypothetical protein
ar4r2_scaffold_2020_9
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8485..8868)
DNA (384bp) protein (128aa)
Endoribonuclease n=2 Tax=Pseudomonas stutzeri subgroup RepID=I4CY87_PSEST
endoribonuclease
Endoribonuclease {ECO:0000313|EMBL:AFM35044.1}; TaxID=1196835 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri CCUG 29243.;"
ar4r2_scaffold_2020_10
Kangiella geojedonensis, Kangiella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8906..9796)
DNA (891bp) protein (297aa)
Transcriptional regulator n=2 Tax=Pseudomonas RepID=J3D562_9PSED
LysR family transcriptional regulator {ECO:0000313|EMBL:AKE51144.1}; TaxID=914150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Kangiella.;" source="Kangiella geojedonensis.;"
LysR family transcriptional regulator
ar4r2_scaffold_2020_11
unknown

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9848..9976
DNA (129bp) protein (43aa)

This feature has no annotations

ar4r2_scaffold_2020_12
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9976..10725
DNA (750bp) protein (250aa)
Molybdopterin binding domain n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31JE1_THICR
Molybdopterin-binding protein {ECO:0000313|EMBL:KDN95969.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
molybdopterin binding domain-containing protein
ar4r2_scaffold_2020_13
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10869..11309
DNA (441bp) protein (147aa)
Ferritin-like protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RXH2_9BURK
Ferritin-like protein {ECO:0000313|EMBL:EFV94968.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
dps; DNA-binding ferritin-like protein
ar4r2_scaffold_2020_14
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11360..12100
DNA (741bp) protein (247aa)
Redoxin domain protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KW88_HALNC rbh
redoxin rbh
Redoxin domain protein {ECO:0000313|EMBL:ACX96991.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
ar4r2_scaffold_2020_15
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12337..13692
DNA (1356bp) protein (452aa)
Glutathione-disulfide reductase n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RSV1_ALLVD rbh
glutathione-disulfide reductase rbh
Glutathione-disulfide reductase {ECO:0000313|EMBL:ADC62260.1}; TaxID=572477 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
ar4r2_scaffold_2020_16
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13896..15107
DNA (1212bp) protein (404aa)
Putative uncharacterized protein n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31J53_THICR rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABB40820.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
ar4r2_scaffold_2020_17
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15117..16208
DNA (1092bp) protein (364aa)
Putative uncharacterized protein n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31J54_THICR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB40819.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
ar4r2_scaffold_2020_18
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16215..17066
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00035E10E7 rbh
ser/threonine protein phosphatase
Ser/threonine protein phosphatase {ECO:0000313|EMBL:AHF01943.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
ar4r2_scaffold_2020_19
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17123..17263)
DNA (141bp) protein (47aa)
ammonium transporter n=1 Tax=Pseudomonas stutzeri RepID=UPI000380BC0E
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
ammonia channel protein
ar4r2_scaffold_2020_20
unknown

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17306..17380
DNA (75bp) protein (25aa)

This feature has no annotations

Displaying 20 items

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