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ALUMROCK_MS4_Gammaproteobacteria_54_60_curated

ALUMROCK_MS4_Gammaproteobacteria_54_1
In projects: ALUMROCK_MS4  |  alumrock-genomes

Consensus taxonomy: Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: ALUMROCK_MS4_Gammaproteobacteria_54_60 Manually curated genome
Original version: ALUMROCK_MS4_Gammaproteobacteria_54_60

Properties

Avg. coverage: 1.00 Longest contig: 60.29 Kbp Bin length: 2.61 Mbp GC content: 54.23 %
Contigs count: 483 Features count: 3063 rRNAs count: 2 tRNAs count: 31

Genome completeness

near complete RP 50 / 55 MC: 4 BSCG 50 / 51 MC: 4 ASCG 12 / 38 MC: 1
Displaying items 151-200 of 483 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
ar4r2_scaffold_12347
Class: Gammaproteobacteria (75%)
4 3295 bp 58.51 1.00 85.31
ar4r2_scaffold_12938
Class: Gammaproteobacteria (50%)
4 3903 bp 56.93 1.00 86.78
ar4r2_scaffold_26277
Class: Gammaproteobacteria (100%)
4 2741 bp 55.49 1.00 99.38
ar4r2_scaffold_43247
Order: Rhodocyclales (50%)
4 2178 bp 56.93 1.00 100.69
ar4r2_scaffold_20800
Class: Gammaproteobacteria (50%)
4 2089 bp 57.35 1.00 98.66
ar4r2_scaffold_9811
Species: Halothiobacillus neapolitanus (50%)
4 4304 bp 54.76 1.00 94.93
ar4r2_scaffold_10326
Species: Halothiobacillus neapolitanus (50%)
4 3605 bp 56.48 1.00 87.79
ar4r2_scaffold_15776
Species: Thioalkalivibrio thiocyanoxidans (50%)
4 2203 bp 50.52 1.00 99.14
ar4r2_scaffold_12529
Species: Halothiobacillus neapolitanus (50%)
4 4131 bp 54.68 1.00 92.69
ar4r2_scaffold_24398
Order: Chromatiales (50%)
4 1413 bp 51.95 1.00 78.34
ar4r2_scaffold_11911
Class: Betaproteobacteria (50%)
4 3904 bp 56.74 1.00 98.13
ar4r2_scaffold_15272
Species: BJP_IG2102_Gammaproteobacteria_62_140 (50%)
4 2256 bp 57.85 1.00 86.04
ar4r2_scaffold_9193
Species: Ralstonia solanacearum (50%)
4 3646 bp 55.24 1.00 94.87
ar4r2_scaffold_14624
Class: Gammaproteobacteria (50%)
4 3998 bp 55.95 1.00 76.54
ar4r2_scaffold_36296
Class: Betaproteobacteria (50%)
4 1925 bp 56.73 1.00 95.84
ar4r2_scaffold_8428
Species: Halothiobacillus neapolitanus (50%)
4 5876 bp 55.55 1.00 95.12
ar4r2_scaffold_6227
Species: Halothiobacillus neapolitanus (75%)
4 4299 bp 59.32 1.00 92.46
ar4r2_scaffold_7156
Class: Gammaproteobacteria (50%)
4 4336 bp 55.56 1.00 94.79
ar4r2_scaffold_15394
Species: Crinalium epipsammum (50%)
4 3083 bp 53.62 1.00 86.02
ar4r2_scaffold_12725
Class: Gammaproteobacteria (100%)
4 2641 bp 52.37 1.00 91.78
ar4r2_scaffold_11055
Class: Gammaproteobacteria (100%)
4 3748 bp 59.28 1.00 100.29
ar4r2_scaffold_14609
Class: Gammaproteobacteria (50%)
4 3234 bp 52.84 1.00 91.47
ar4r2_scaffold_11579
Class: Gammaproteobacteria (75%)
4 3557 bp 53.22 1.00 87.88
ar4r2_scaffold_7304
Order: Chromatiales (50%)
4 4192 bp 55.08 1.00 93.25
ar4r2_scaffold_12702
Class: Gammaproteobacteria (75%)
4 2790 bp 57.74 1.00 100.00
ar4r2_scaffold_9186
Class: Gammaproteobacteria (50%)
4 3519 bp 50.30 1.00 75.11
ar4r2_scaffold_20727
Class: Betaproteobacteria (50%)
4 3262 bp 50.40 1.00 87.46
ar4r2_scaffold_8514
Species: Halothiobacillus neapolitanus (100%)
4 5212 bp 52.92 1.00 97.45
ar4r2_scaffold_12677
Order: Chromatiales (50%)
4 2363 bp 53.83 1.00 99.03
ar4r2_scaffold_16188
Domain: Bacteria (50%)
4 3118 bp 53.50 1.00 89.29
ar4r2_scaffold_10317
Class: Gammaproteobacteria (50%)
4 3626 bp 54.30 1.00 88.78
ar4r2_scaffold_6634
Class: Gammaproteobacteria (50%)
4 4921 bp 56.66 1.00 92.42
ar4r2_scaffold_16459
Class: Gammaproteobacteria (75%)
4 3564 bp 52.64 1.00 82.58
ar4r2_scaffold_12357
Order: Chromatiales (50%)
4 3279 bp 55.20 1.00 90.76
ar4r2_scaffold_29248
Phylum: Proteobacteria (50%)
4 2107 bp 54.44 1.00 94.40
ar4r2_scaffold_12458
Order: Chromatiales (50%)
4 3799 bp 55.38 1.00 89.08
ar4r2_scaffold_5781
Species: Candidatus Magnetobacterium bavaricum (50%)
4 4947 bp 57.55 1.00 90.24
ar4r2_scaffold_9563
Species: Thiothrix nivea (100%)
4 4305 bp 53.96 1.00 95.12
ar4r2_scaffold_7059
Order: Chromatiales (50%)
4 4157 bp 50.40 1.00 84.29
ar4r2_scaffold_19178
Class: Gammaproteobacteria (75%)
4 3325 bp 58.77 1.00 98.89
ar4r2_scaffold_16246
Class: Gammaproteobacteria (75%)
4 4169 bp 58.55 1.00 96.14
ar4r2_scaffold_7188
Class: Gammaproteobacteria (50%)
4 5827 bp 56.84 1.00 95.45
ar4r2_scaffold_22930
Species: Thiothrix nivea (50%)
4 1860 bp 53.01 1.00 90.48
ar4r2_scaffold_16790
Class: Gammaproteobacteria (75%)
4 2900 bp 52.00 1.00 88.45
ar4r2_scaffold_24943
Class: Gammaproteobacteria (75%)
4 3254 bp 59.62 1.00 100.22
ar4r2_scaffold_25008
Class: Gammaproteobacteria (75%)
4 2516 bp 59.10 1.00 92.05
ar4r2_scaffold_8803
Order: Chromatiales (50%)
4 3540 bp 57.51 1.00 98.98
ar4r2_scaffold_7000
Class: Gammaproteobacteria (50%)
4 3881 bp 51.07 1.00 98.79
ar4r2_scaffold_16541
Order: Chromatiales (50%)
4 2480 bp 54.07 1.00 89.64
ar4r2_scaffold_26464
Class: Gammaproteobacteria (75%)
4 1677 bp 53.91 1.00 99.46
Displaying items 151-200 of 483 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.