ggKbase home page

ar4r2_scaffold_19257_5

Organism: ALUMROCK_MS4_Thiothrix_nivea-related_50_537_curated

megabin RP 46 / 55 MC: 7 BSCG 48 / 51 MC: 12 ASCG 13 / 38 MC: 6
Location: comp(1206..2543)

Top 3 Functional Annotations

Value Algorithm Source
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.0
  • Coverage: 446.0
  • Bit_score: 739
  • Evalue 2.40e-210
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BZ74_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 80.0
  • Coverage: 446.0
  • Bit_score: 739
  • Evalue 1.70e-210
  • rbh
23S rRNA methyltransferase similarity KEGG
DB: KEGG
  • Identity: 54.3
  • Coverage: 444.0
  • Bit_score: 485
  • Evalue 1.30e-134

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Thiothrix nivea → Thiothrix → Thiotrichales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1338
ATGAGTCGCAGCAGAAAACCCCGTGGCGTAAAAAACAGCCCACTTGTCGAAACCACTATCGAATCCCTCACGCTTGACGGTCAGGGTGTCGCCCACATTGACGGCAAAACCGTATTCATTGACGGTGCGTTGCCGGGTGAAACCGTCGCTTTTCGCTACACCTCTTACAAAGCTAAACACGACGAAGGCAAGGTCGAAACCGTCCTTACGCCATCACTAGAACGGGTAGAACCGCGTTGCGAACACTTCGGCGTATGCGGCGCGTGTAGCTGGCAACACATTTCGCTGGAAGGGCAGATTCGCCATAAACAGCAAGCCATGCTCAATAATCTTAAATATATCGGCAAAGTCGAACCTGAAACAGTGCTTGAACCCTTGACCGCAGAAGGTTGGGCATACCGTCGTAAAGCCCGTTTGGGGGCGCGTTGGGTACGCAAGAAAGAGAAAGCGTTGGTGGGGTTCCGCGAAAAAGAGGGCGGTTTCCTCGCAGAACTCAACCGTTGCGAAATTTTACACCCCAGCATCGGCGAGCATCTCACGGATTTTCAAGCTTTAGTGGGTGGCATGGAAGCGCGTGAAACCATTCCGCAAATCGAAGTGGCAGTGGGTGATAATGCCACTGCTCTGGTGGTGCGTCACATGGAACCCTTGTCTGACACAGACACGCAAAAATTAATCGACTTCGCCCGCGAGTGGGATTATCAGCTTTATTTGCAGCCTAAAGGCCCTGAAACTGTTCACTGCATTTATCCTGAAAACCCGACGTTGTATTACGAGCATCCGCAGTTCAATACCAAAGTAGGTTTCGTCCCGCTCGACTTTTTCCAAGTTAATCAGCCGCTCAACCGTAAAATGGTAGCGCGTGCCTTGGAATTGCTTGCACCTGAACCCACCGATACGGTATTAGATTTATTCTGTGGCTTGGGCAATTTTACTTTGCCATTGGCACGTCATGCCGCCCAAGTGATTGGTGTGGAAGGCGATATGGCGATGGTGGAACGCGCTCGTGCGGCGGCGCACGCCAACGACATTCACAACACCGATTACTACGCTTGCAACCTGATGGGCGAGGATTTACACCGCGAACCGTGGTTGAAAAAACACCGTTATGACAAGATTTTACTTGATCCACCGCGTGCGGGCGCGAAAGAAATCATTGAGCATATCGGCAAGCTCAAAGCGGGACGCATTGTGTATATTTCCTGCGATCCAGCAACGTTAGCGCGTGACGCGGGTGAATTGGTGAATACGCATGGCTATCGCTTAGCGAGTGCAGGGGTGATGGATATGTTTCCGCATACATCGCATGTTGAATGCATCGCGGTGTTTGAGAAATAA
PROTEIN sequence
Length: 446
MSRSRKPRGVKNSPLVETTIESLTLDGQGVAHIDGKTVFIDGALPGETVAFRYTSYKAKHDEGKVETVLTPSLERVEPRCEHFGVCGACSWQHISLEGQIRHKQQAMLNNLKYIGKVEPETVLEPLTAEGWAYRRKARLGARWVRKKEKALVGFREKEGGFLAELNRCEILHPSIGEHLTDFQALVGGMEARETIPQIEVAVGDNATALVVRHMEPLSDTDTQKLIDFAREWDYQLYLQPKGPETVHCIYPENPTLYYEHPQFNTKVGFVPLDFFQVNQPLNRKMVARALELLAPEPTDTVLDLFCGLGNFTLPLARHAAQVIGVEGDMAMVERARAAAHANDIHNTDYYACNLMGEDLHREPWLKKHRYDKILLDPPRAGAKEIIEHIGKLKAGRIVYISCDPATLARDAGELVNTHGYRLASAGVMDMFPHTSHVECIAVFEK*