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AR_MS4_05142019_scaffold_1549

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AR_MS4_05142019_scaffold_1549_1
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

2..241
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000374331C
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
xerD; Site-specific recombinase XerD
AR_MS4_05142019_scaffold_1549_2
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

426..1835
DNA (1410bp) protein (470aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036CB54F
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase
3-deoxy-D-manno-octulosonic-acid transferase {ECO:0000313|EMBL:ACD83790.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_1549_3
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

1838..2842
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000382BE82
ccmA; multidrug ABC transporter ATPase
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:ACD83789.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_1549_4
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

2823..3629
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003743B2D
multidrug ABC transporter permease
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_1549_5
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

3626..4321
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000378F15D
Cu2+-binding oxygen sensor (SCO1/SenC/PrrC family) {ECO:0000313|EMBL:CCG92023.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
Cu2+-binding oxygen sensor (SCO1/SenC/PrrC family)
AR_MS4_05142019_scaffold_1549_6
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

4318..4752
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000381DE95
Uncharacterized protein {ECO:0000313|EMBL:KIE59110.1}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
hypothetical protein
AR_MS4_05142019_scaffold_1549_7
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

4840..6396
DNA (1557bp) protein (519aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00035EBC76
zwf; glucose-6-phosphate 1-dehydrogenase
AR_MS4_05142019_scaffold_1549_8
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

6399..7079
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036B365C
6-phosphogluconolactonase {ECO:0000313|EMBL:KIE59310.1}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
nagB; 6-phosphogluconolactonase/glucosamine-6-phosphate isomerase/deaminase
AR_MS4_05142019_scaffold_1549_9
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

7076..7750
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000372C026
Uncharacterized protein {ECO:0000313|EMBL:CCG92151.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
nrfG; TPR repeats containing protein
AR_MS4_05142019_scaffold_1549_trna_1
unknown

Not on your lists

7797..7868
DNA (72bp)
transferRNA Cys
AR_MS4_05142019_scaffold_1549_10
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7980..8699
DNA (720bp) protein (240aa)
ubiG2; 3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
3-demethylubiquinone-9 3-O-methyltransferase {ECO:0000313|EMBL:CAN92342.1}; EC=2.1.1.64 {ECO:0000313|EMBL:CAN92342.1};; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
3-demethylubiquinone-9 3-O-methyltransferase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FW46_SORC5
AR_MS4_05142019_scaffold_1549_11
unknown

Not on your lists

8696..8836
DNA (141bp) protein (47aa)

This feature has no annotations

AR_MS4_05142019_scaffold_1549_12
Azotobacter chroococcum, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9181..10878)
DNA (1698bp) protein (566aa)
hypothetical protein n=1 Tax=Methylocystis rosea RepID=UPI000369944B
arsD; Type I fatty acid synthase ArsD
ArsD protein {ECO:0000313|EMBL:AJE21287.1}; TaxID=1328314 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter chroococcum NCIMB 8003.;"
AR_MS4_05142019_scaffold_1549_13
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10875..12080)
DNA (1206bp) protein (402aa)
Type III polyketide synthase n=3 Tax=Azotobacter vinelandii RepID=C1DM34_AZOVD
arsB; Type III polyketide synthase
Type III polyketide synthase {ECO:0000313|EMBL:ACO79121.1}; TaxID=322710 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii (strain DJ / ATCC BAA-1303).;"
AR_MS4_05142019_scaffold_1549_14
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12098..19483)
DNA (7386bp) protein (2462aa)
hypothetical protein n=1 Tax=Methylocystis rosea RepID=UPI000368F936
Type I fatty acid synthase ArsA {ECO:0000313|EMBL:AGK17580.1}; TaxID=1283331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii CA6.;"
arsA; type I fatty acid synthase ArsA
AR_MS4_05142019_scaffold_1549_15
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(19629..20627)
DNA (999bp) protein (333aa)
Putative electron transfer oxidoreductase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZWF9_OPITP
electron transfer oxidoreductase
Putative electron transfer oxidoreductase {ECO:0000313|EMBL:ACB76911.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
AR_MS4_05142019_scaffold_1549_16
unknown

Not on your lists

20695..20943
DNA (249bp) protein (83aa)

This feature has no annotations

AR_MS4_05142019_scaffold_1549_17
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

21032..21760
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000375BCAC
erfK; erfK/srfK family protein
Uncharacterized erfK/srfK family protein {ECO:0000313|EMBL:ACD82729.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_1549_18
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(21744..24470)
DNA (2727bp) protein (909aa)
Isoleucine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_02002}; EC=6.1.1.5 {ECO:0000255|HAMAP-Rule:MF_02002};; Isoleucyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_02002}; Short=IleRS {ECO:0000255|HAMAP-Rule:MF_02002};; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000362202C
ileS; Isoleucyl-tRNA synthetase
AR_MS4_05142019_scaffold_1549_19
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists


comp(24477..25517)
DNA (1041bp) protein (347aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000363EDB6
pheS; Phenylalanyl-tRNA synthetase alpha subunit
AR_MS4_05142019_scaffold_1549_20
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(25574..26587)
DNA (1014bp) protein (338aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003629531
ResB protein required for cytochrome c biosynthesis {ECO:0000313|EMBL:CCG92074.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
resB; ResB protein required for cytochrome c biosynthesis
AR_MS4_05142019_scaffold_1549_21
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(26601..27377)
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003629531
ResB protein required for cytochrome c biosynthesis {ECO:0000313|EMBL:CCG92074.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
resB; ResB protein required for cytochrome c biosynthesis
AR_MS4_05142019_scaffold_1549_22
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

27502..29181
DNA (1680bp) protein (560aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037E0EFE
mIS1; Formyltetrahydrofolate synthetase
AR_MS4_05142019_scaffold_1549_23
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(29206..30015)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037AD9CC
alpha/beta fold family hydrolase
Hydrolase, alpha/beta fold family {ECO:0000313|EMBL:ACO34183.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
AR_MS4_05142019_scaffold_1549_24
unknown

Not on your lists

comp(30092..30610)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00038114F5
Displaying 25 items

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