ggKbase home page

AR_MS4_05142019_scaffold_54939_2

Organism: Alum_Rock_2019_MS4_Methylacidiphilum-related_63_13

near complete RP 46 / 55 MC: 4 BSCG 46 / 51 MC: 3 ASCG 11 / 38 MC: 2
Location: comp(271..2175)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.8
  • Coverage: 632.0
  • Bit_score: 810
  • Evalue 9.20e-232
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003663FCB similarity UNIREF
DB: UNIREF100
  • Identity: 89.2
  • Coverage: 630.0
  • Bit_score: 1114
  • Evalue 0.0
mfd; transcription-repair coupling factor mfd (superfamily II helicase) similarity KEGG
DB: KEGG
  • Identity: 62.8
  • Coverage: 632.0
  • Bit_score: 810
  • Evalue 1.90e-232

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Methylacidiphilum infernorum → Methylacidiphilum → Methylacidiphilales → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1905
TACAAAGGTGTGGAAGCTCTTCCGGACGGGGGGCAAGAAGCGCTACTCCTGGAATTTGCCGAAGGATCCAAGCTGTTCGTGCCGATCGACCAGAGCTACTTGGTTTCGCGCTACATCGGCGGGACCCGTCGCGCCCCGAAGCTCGACAAGCTGGGAGGCAACCGCTGGCAAAACGCCCGCGCGGTTGCCCAGGGAGCGATTCGAGACTACGCCGCTAAGCTCTTGCGACTGCAGGCCGAACGACAGGTGCTTTCCGGAAACGCTTGCCCGCCCGATTCCGATTGGCAACGGGAGTTCGAGAAATCATTCGTCTACCGGGAGACCCCCGATCAACTCCGTGCTATCGAGCAGACCAAGGCAGACATGGAAGCGGCACGGCCCATGGATCGCCTCATTTGCGGCGACGTAGGATTCGGCAAGACCGAAGTCGCCATTCGGGCCATCTTCAAGGTTGCCGTCGGCGGCAAGCAGGCCGCCCTGCTTGCTCCGACGACCGTGCTCGCCTACCAACACTACCAGACCCTCCGACAGCGCTTTGCGGACTACCCTGTCCAAGTCGCCTTCCTAGGCCGCCTCGCATCGGCTGCGGAAGAGCGGCGGGTGCTGGCCGCACTCGCTTCGGGCGAGTGCGACGTCGTTGTCGGCACGCATCGGCTCCTTTCCCCGGACGTCGCCTTTGCCCGCCTGGGACTGGTCGTGATCGACGAAGAGCAGCGCTTCGGCGTGCACCAGAAAGAGCGTTGGAAGGAACGTCTCCGCTCCGTAGACATGCTCGCTCTCTCCGCAACTCCAATTCCCCGCACCCTCTATCTCGCCTTGGCGGGGGCACGCGATCTGAGCCTCGTCGAAACTCCTCCACCGAATCGCCTCCCGATCGAAACCATGGTCTGCCCCTATGACGAACGGACGATCCGCTCTGCCATCGAAAAGGAGCTCGCCCGGGGGGGACAAGTCTACTTCCTGCACAATCGGATCGCTTCGATCGGGCGAGTTTGCCGACGGCTTCGAGAGATCGTCCCTGCGGCTCGAATCGACATCGGCCATGGTCAAATGGAGAAGGAGCATCTCGAGGACGTGATGCAACGATTCGTGGCCGGAGAGACCGATGTCCTCTTGGCCACCTCGATCATCGAAAACGGGCTCGATATTCCCAACGCAAACACGATCGTCGTCGACCGGGCCGACCGATTCGGCCTGGCCGATCTCTACCAGCTCCGCGGGCGCGTCGGTCGATCCAGCCAGAAAGCCTTCGCCTATCTCCTACTGCCCCGTGACCGTTTTATGGCGGCCGATGCCAAGCGGCGCATCCGCGCCATGCAGGAATACAGCCAGCTCGGGGCGGGTTTCCGCATCGCGCTTCGCGACCTGGAGATTCGGGGAGCGGGAAATCTGCTCGGGACGGCGCAGAGCGGTCACATCGCAGCCATCGGCTTCGATCTCTACTGCCGCCTTCTCCGGGAAGCGGTCGCCGCCGTGCAGGGGAAGAAGGTGCGAAGTCCGCTTGCGTGCAAGGTTTCGGTCGACTTCCTGGGCAGCGGCCCGGGGGGACCGGGACTGCCTGCTTCCTACATCGCCTCCACCGAAGAGCGTATCGCCGCACACCGTCAAGCTGCGGAAGCCGGATCGCTGGAAGAATGCCGGGAGTTGGAGAGGGCCTGGCGCGACCGATTCGGCCCGCTCCCGGAACCCGCTCGCTTCCTCCTGGGAGAGGTCGAGCTGCGGATTCTGGGGAGTGACCATGCGCTGGAACGCGTCGAGGTGCAAGGAGACAAGCTCCTCCTGCAGCGTAAGGGCCGCTATCTCATGGTTGGCGGCCGCTTCCCTCGCTTGACCGGACAAGATACGAGAAGTAGGCTTGCATCGATCAAGAAGTGGATCGTAAGGTTGGGCTCATCCAGTCCGTGA
PROTEIN sequence
Length: 635
YKGVEALPDGGQEALLLEFAEGSKLFVPIDQSYLVSRYIGGTRRAPKLDKLGGNRWQNARAVAQGAIRDYAAKLLRLQAERQVLSGNACPPDSDWQREFEKSFVYRETPDQLRAIEQTKADMEAARPMDRLICGDVGFGKTEVAIRAIFKVAVGGKQAALLAPTTVLAYQHYQTLRQRFADYPVQVAFLGRLASAAEERRVLAALASGECDVVVGTHRLLSPDVAFARLGLVVIDEEQRFGVHQKERWKERLRSVDMLALSATPIPRTLYLALAGARDLSLVETPPPNRLPIETMVCPYDERTIRSAIEKELARGGQVYFLHNRIASIGRVCRRLREIVPAARIDIGHGQMEKEHLEDVMQRFVAGETDVLLATSIIENGLDIPNANTIVVDRADRFGLADLYQLRGRVGRSSQKAFAYLLLPRDRFMAADAKRRIRAMQEYSQLGAGFRIALRDLEIRGAGNLLGTAQSGHIAAIGFDLYCRLLREAVAAVQGKKVRSPLACKVSVDFLGSGPGGPGLPASYIASTEERIAAHRQAAEAGSLEECRELERAWRDRFGPLPEPARFLLGEVELRILGSDHALERVEVQGDKLLLQRKGRYLMVGGRFPRLTGQDTRSRLASIKKWIVRLGSSSP*