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BD02T64_scaffold_22_377

Organism: BD02T64_Colwellia_psychrerythraea_38_180_partial

partial RP 29 / 55 MC: 4 BSCG 30 / 51 MC: 3 ASCG 10 / 38 MC: 1
Location: comp(452280..452831)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Shewanella woodyi (strain ATCC 51908 / MS32) RepID=B1KES9_SHEWM similarity UNIREF
DB: UNIREF100
  • Identity: 61.4
  • Coverage: 184.0
  • Bit_score: 227
  • Evalue 1.50e-56
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 61.4
  • Coverage: 184.0
  • Bit_score: 227
  • Evalue 4.30e-57
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACA88094.1}; TaxID=392500 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" sourc similarity UNIPROT
DB: UniProtKB
  • Identity: 61.4
  • Coverage: 184.0
  • Bit_score: 227
  • Evalue 2.10e-56

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Taxonomy

Shewanella woodyi → Shewanella → Alteromonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 552
ATGTTTCACAAATTATTTCTTGTATCACGAGATAGCATTAAAAGAGTTGTTGCTCAAATAGTGCCGCCTCATGACATTGAAGATATCGTACAAGAAACCTATGTACGCCTTTGCCAAGTTAATGATGATACAAAAATTAACTCTCCAAAATCTTTTATGTATACCATCGCCAGAAACCTTGCACTTGATTATCAAAAACAAGCCTATGTCAGACTCTTTGACAAAGTAGATGACTGGCAAGAGTTTGAGCAACTTTTAAATGTTGACGCTAAAGATGAAGTTTATCAAAAAATAGAAGTCGATCATGAATTTTCCAATTTTTGTGAAGCAATAAGGTTACTACCAACAAAAACGCGGAAGATATTTGTGTTGAAAAAAGTCTACGGATATTCTCAAAAAGAAATAGCCCAACAACTCACACTAAGTGAAAATACCATTGAAAAACACATTTCTACAGGAACCAAACGTTGTACTTTATTTTTGCGAAAATTAAATCAGGGCATAAAAACGTCTCAACAGGTCAAGTTAGAAAAAGGAGATCATCATGAGTAA
PROTEIN sequence
Length: 184
MFHKLFLVSRDSIKRVVAQIVPPHDIEDIVQETYVRLCQVNDDTKINSPKSFMYTIARNLALDYQKQAYVRLFDKVDDWQEFEQLLNVDAKDEVYQKIEVDHEFSNFCEAIRLLPTKTRKIFVLKKVYGYSQKEIAQQLTLSENTIEKHISTGTKRCTLFLRKLNQGIKTSQQVKLEKGDHHE*