ggKbase home page

bjp_ig2103_scaffold_179_curated

Search features with annotation key words

Displaying items 31-60 of 102 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig2103_scaffold_179_curated_31
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34203..34787
DNA (585bp) protein (195aa)
Chromate reductase, Class I, flavoprotein {ECO:0000313|EMBL:CDL00378.1}; EC=1.6.5.2 {ECO:0000313|EMBL:CDL00378.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
Chromate reductase, Class I, flavoprotein n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F7C0_9PROT
NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase
bjp_ig2103_scaffold_179_curated_32
unknown

Not on your lists

34978..35985
DNA (1008bp) protein (336aa)
hypothetical protein id=5082160 bin=GWF1_Burkholderiales_GWF1_66_17 species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein rbh
bjp_ig2103_scaffold_179_curated_33
unknown

Not on your lists

36105..36548
DNA (444bp) protein (148aa)
hypothetical protein id=12552371 bin=BDI species=Pseudomonas sp. GM102 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
PRC-barrel domain protein
bjp_ig2103_scaffold_179_curated_34
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36596..36760)
DNA (165bp) protein (55aa)
membrane protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00036D129F
hypothetical protein
UPF0391 membrane protein Daro_2080 {ECO:0000255|HAMAP-Rule:MF_01361}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_179_curated_35
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36788..36946)
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9Z0K3_9NEIS
Uncharacterized protein {ECO:0000313|EMBL:EEG09609.1}; TaxID=279714 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans 2002.;"
hypothetical protein
bjp_ig2103_scaffold_179_curated_36
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37161..37472
DNA (312bp) protein (104aa)
Putative uncharacterized protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CTC3_SIDLE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE12209.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
bjp_ig2103_scaffold_179_curated_37
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37607..37810
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Oceanimonas smirnovii RepID=UPI00036C401C
Uncharacterized protein {ECO:0000313|EMBL:EOA03425.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
hypothetical protein
bjp_ig2103_scaffold_179_curated_38
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37862..38083
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. KH32C RepID=H0Q5I6_9RHOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL27249.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
bjp_ig2103_scaffold_179_curated_39
unknown

Not on your lists

38092..40614
DNA (2523bp) protein (841aa)
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) id=1312406 bin=GWE1_T_denit_62_9 species=Dechloromonas aromatica genus=Dechloromonas taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) rbh
bjp_ig2103_scaffold_179_curated_40
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40761..41075
DNA (315bp) protein (105aa)
Transport-associated protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47ED9_DECAR
Osmotically-inducible protein Y {ECO:0000313|EMBL:EXI71317.1}; Flags: Precursor;; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
transport-associated protein; K04065 hyperosmotically inducible periplasmic protein
bjp_ig2103_scaffold_179_curated_41
unknown

Not on your lists

comp(41119..41919)
DNA (801bp) protein (267aa)
Transcriptional regulator, Crp/Fnr family id=1312394 bin=GWE1_T_denit_62_9 species=unknown genus=Methylovorus taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Crp/Fnr family transcriptional regulator
bjp_ig2103_scaffold_179_curated_42
unknown

Not on your lists

42165..42644
DNA (480bp) protein (160aa)

This feature has no annotations

bjp_ig2103_scaffold_179_curated_43
unknown

Not on your lists

42800..42931
DNA (132bp) protein (44aa)

This feature has no annotations

bjp_ig2103_scaffold_179_curated_44
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42976..43191
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=Marinobacterium stanieri RepID=UPI0002559281
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAI08463.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
bjp_ig2103_scaffold_179_curated_45
unknown

Not on your lists

comp(43206..44294)
DNA (1089bp) protein (363aa)
CaCA family Na+/Ca+ antiporter n=2 Tax=Thauera RepID=N6X1H9_9RHOO rbh
K+-dependent Na+/Ca+ exchanger-like protein; K07301 inner membrane protein rbh
bjp_ig2103_scaffold_179_curated_46
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44390..44887
DNA (498bp) protein (166aa)
tRNA-adenosine deaminase (EC:3.5.4.-); K01485 cytosine deaminase [EC:3.5.4.1]
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
tRNA-adenosine deaminase n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47DZ0_DECAR
bjp_ig2103_scaffold_179_curated_47
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44884..45366
DNA (483bp) protein (161aa)
ErfK/YbiS/YcfS/YnhG n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47DZ1_DECAR
ErfK/YbiS/YcfS/YnhG
ErfK/YbiS/YcfS/YnhG {ECO:0000313|EMBL:AAZ46940.1}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_179_curated_48
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45336..46085)
DNA (750bp) protein (250aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47DZ2_DECAR rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ46939.1}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_179_curated_49
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46088..47104)
DNA (1017bp) protein (339aa)
Glycine cleavage T protein (Aminomethyl transferase) n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47DZ3_DECAR rbh
glycine cleavage T protein (aminomethyl transferase); K06980 rbh
Glycine cleavage T protein (Aminomethyl transferase) {ECO:0000313|EMBL:AAZ46938.1}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_179_curated_50
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47196..48191
DNA (996bp) protein (332aa)
Aminodeoxychorismate lyase n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47DZ4_DECAR rbh
aminodeoxychorismate lyase; K07082 UPF0755 protein rbh
Aminodeoxychorismate lyase {ECO:0000313|EMBL:AAZ46937.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_179_curated_51
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48188..48796
DNA (609bp) protein (203aa)
tmk; thymidylate kinase (EC:2.7.4.9); K00943 dTMP kinase [EC:2.7.4.9] rbh
Thymidylate kinase {ECO:0000255|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000255|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000255|HAMAP-Rule:MF_00165}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
Thymidylate kinase n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=KTHY_DECAR rbh
bjp_ig2103_scaffold_179_curated_52
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48799..49821
DNA (1023bp) protein (341aa)
DNA polymerase III subunit delta' (EC:2.7.7.7); K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] rbh
DNA polymerase III, delta prime subunit {ECO:0000313|EMBL:AAZ46935.1}; EC=2.7.7.7 {ECO:0000313|EMBL:AAZ46935.1};; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
DNA polymerase III, delta prime subunit n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47DZ6_DECAR rbh
bjp_ig2103_scaffold_179_curated_53
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49825..50187
DNA (363bp) protein (121aa)
Type IV pilus assembly PilZ n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47DZ7_DECAR
Type IV pilus assembly PilZ; K02676 type IV pilus assembly protein PilZ
Type IV pilus assembly PilZ {ECO:0000313|EMBL:AAZ46934.1}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_179_curated_54
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50196..50978
DNA (783bp) protein (261aa)
TatD-related deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-] rbh
TatD-related deoxyribonuclease n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47DZ8_DECAR rbh
TatD-related deoxyribonuclease {ECO:0000313|EMBL:AAZ46933.1}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_179_curated_55
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50975..51634
DNA (660bp) protein (220aa)
Ankyrin n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47DZ9_DECAR rbh
ankyrin; K06867 rbh
Ankyrin {ECO:0000313|EMBL:AAZ46932.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_179_curated_56
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51642..52400)
DNA (759bp) protein (253aa)
frdB; fumarate reductase iron-sulfur subunit (EC:1.3.5.1); K00245 fumarate reductase iron-sulfur subunit [EC:1.3.99.1] rbh
Succinate dehydrogenase subunit B {ECO:0000313|EMBL:AAZ46523.1}; EC=1.3.5.1 {ECO:0000313|EMBL:AAZ46523.1};; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
Succinate dehydrogenase subunit B n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47F58_DECAR rbh
bjp_ig2103_scaffold_179_curated_57
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52397..54376)
DNA (1980bp) protein (660aa)
Succinate dehydrogenase subunit A {ECO:0000313|EMBL:AAZ46524.1}; EC=1.3.5.1 {ECO:0000313|EMBL:AAZ46524.1};; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
fumarate reductase flavoprotein subunit (EC:1.3.5.1); K00244 fumarate reductase flavoprotein subunit [EC:1.3.99.1] rbh
Succinate dehydrogenase subunit A n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47F57_DECAR rbh
bjp_ig2103_scaffold_179_curated_58
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54378..55211)
DNA (834bp) protein (278aa)
Fumarate reductase respiratory complex, transmembrane subunit n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47F56_DECAR rbh
fumarate reductase cytochrome b-556 subunit; K00246 fumarate reductase subunit C rbh
Fumarate reductase respiratory complex, transmembrane subunit {ECO:0000313|EMBL:AAZ46525.1}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_179_curated_59
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55314..56444
DNA (1131bp) protein (377aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47A24_DECAR rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ48307.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_179_curated_60
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56470..57465
DNA (996bp) protein (332aa)
TRAP dicarboxylate transporter-DctP subunit n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47A25_DECAR rbh
TRAP dicarboxylate transporter-DctP subunit rbh
TRAP dicarboxylate transporter-DctP subunit {ECO:0000313|EMBL:AAZ48306.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
Displaying items 31-60 of 102 in total

View Taxonomy