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bjp_ig2103_scaffold_119_curated_5

Organism: BJP_Ig2103_Hor_218_2014_Methanoregula_55_19_curated

near complete RP 35 / 55 MC: 8 BSCG 22 / 51 MC: 1 ASCG 38 / 38
Location: comp(2600..3874)

Top 3 Functional Annotations

Value Algorithm Source
Probable tRNA pseudouridine synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; EC=5.4.99.27 {ECO:0000256|HAMAP-Rule:MF_01082};; tRNA pseudouridine(13) synthase {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA pseudouridylate synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA-uridine isomerase D {ECO:0000256|HAMAP-Rule:MF_01082}; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 70.0
  • Coverage: 426.0
  • Bit_score: 608
  • Evalue 8.80e-171
Probable tRNA pseudouridine synthase D n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HJ04_METFS similarity UNIREF
DB: UNIREF100
  • Identity: 70.0
  • Coverage: 426.0
  • Bit_score: 608
  • Evalue 4.30e-171
  • rbh
tRNA pseudouridine synthase, TruD family similarity KEGG
DB: KEGG
  • Identity: 70.0
  • Coverage: 426.0
  • Bit_score: 608
  • Evalue 1.40e-171
  • rbh

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Taxonomy

Methanoregula formicica → Methanoregula → Methanomicrobiales → Methanomicrobia → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 1275
ATGAAAAAGAGTACGTTCCCGCTCGAGATCGATCTCGGGATGCGGTATTATGCAAGCGATGCTGAGGGTATCGGCGGAAGGCTCCGGTCCGTTCCTGAGGATTTCCGGGTGGACGAGATCCCGCTTGAGGGAAAAGGCGGGACTGCCGGGCCATTTCTGATCTGCCGGCTCACCAAAACCAACTGGGAACTCCAGCACGCGGTAAAAGAGATTGCCAAACGGCTCGGTATCAGCCACCGCAGGATCGGATGGGCGGGAACCAAGGACCGGAACGCGATAACCCGCCAGTGGATCTCGCTCTATAACGTTACTGCTGAACAGGTGGCAGCAATATCCTTAAAGGATATCTCCTTAGAAGTCCTCGGGCAGTCCAACGAGGCGCTGGCACTGGGAAGCCTGCTGGGGAACCGGTTCGAACTGGTGATCAGAGATGCAGATACTGCCGGCATAGAGACCCGGGTCGCGGAGATCAGCAGCACAATCGGGGCGGGCATCCCGAACTATTTCGGGCTCCAGCGGTTCGGCGCCATCCGTCCCGTCACCCACCGGGTCGGTGAATGGATCCTGCGGGGCGACTTTGAACAGGCGGTCATGACCTATGTTGCCATGGAATTTCCCGGTGAGCCCGATCCCATCAGGGAGATCCGCCAGGCATTCCGGGAAACCCGGGATCCGGGCGCCTGCCTGCATACCCTCCCGGTGCAGATGAGTTATGAGCGGGCCATGCTCCACCACCTTTACACAAATCCCGGCGATTATGCCGGTGCCCTGCAGGAACTTCCTCCCAAACTCCTCTCGATGTTCGTCTCCGCGTACCAGTCGTATCTCTTCAACTGTTCGTTGAGTCAACGGTTCGATGACGGGCATACCCTTACGGATCCGCTTCCCGGGGACAAACTTATCTTTGCCAATGGCAGGACCGATACAGCGACCCCTGCAAACCTCGCCGCGGCAGCGTTGCATATCCGGAGGGGACGGTGCAGCATCGCCCTCTTCATGCCCGGTAAAAGCCAGCCCGGCAGTTCATCGCCAGTGGATCCGGTCACGGCGGCGCTGCTTGCGGATGCCCGGATCACGCCGGATGATTTTGGCCGGGCTGCTGCATTCGTGCACACACGATTCGACGGGGCTTACCGCCCGATCGCCCTGAAAACAGAGATTGATTCCGTAATTGATGGCACCAGCCTTGGCCTGAAGTTCGTTTTACCCCCGTCCCACTACGCGACAACCGTGTGCCGGGAGTTCATGAAAACAGATCCGATAAAAATGATTTAG
PROTEIN sequence
Length: 425
MKKSTFPLEIDLGMRYYASDAEGIGGRLRSVPEDFRVDEIPLEGKGGTAGPFLICRLTKTNWELQHAVKEIAKRLGISHRRIGWAGTKDRNAITRQWISLYNVTAEQVAAISLKDISLEVLGQSNEALALGSLLGNRFELVIRDADTAGIETRVAEISSTIGAGIPNYFGLQRFGAIRPVTHRVGEWILRGDFEQAVMTYVAMEFPGEPDPIREIRQAFRETRDPGACLHTLPVQMSYERAMLHHLYTNPGDYAGALQELPPKLLSMFVSAYQSYLFNCSLSQRFDDGHTLTDPLPGDKLIFANGRTDTATPANLAAAALHIRRGRCSIALFMPGKSQPGSSSPVDPVTAALLADARITPDDFGRAAAFVHTRFDGAYRPIALKTEIDSVIDGTSLGLKFVLPPSHYATTVCREFMKTDPIKMI*