ggKbase home page

RifSed_csp2_16ft_3_scaffold_10522_13

Organism: RifSed_csp2_16ft_3_Methanoperedens_45_12

near complete RP 32 / 55 MC: 3 BSCG 28 / 51 ASCG 37 / 38 MC: 1
Location: comp(10952..11230)

Top 3 Functional Annotations

Value Algorithm Source
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.8
  • Coverage: 74.0
  • Bit_score: 127
  • Evalue 8.90e-27
CRISPR-associated endonuclease Cas1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HGN5_METFS similarity UNIREF
DB: UNIREF100
  • Identity: 86.4
  • Coverage: 66.0
  • Bit_score: 119
  • Evalue 1.00e-24
CRISPR-associated endonuclease Cas1 similarity KEGG
DB: KEGG
  • Identity: 86.4
  • Coverage: 66.0
  • Bit_score: 119
  • Evalue 2.90e-25

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Candidatus Methanoperedens nitroreducens → Candidatus Methanoperedens → Methanosarcinales → Methanomicrobia → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 279
TTGTTTGGAGTCATCATAATTCCTGATGCGGTATACAATGAATTGACAACAGGAAGCTTTGAAGTTTCAGCCGACAAGGTGGACAGCATCCTCATCACCACAGCGGCGACCATCACCACGGACGCCATCGAATTCGCTGTTGAGAATAATATCGATATAGTTTTTCTCGATTTCAACAAGAACCCCTACGGCAGAGTCTGGCACTCAAAGCTTGGAAGCACCACACTGATACGGCGCAGGCAGCTTGAGGCAGAAGCCTCTGCATACGTCATCGGTTAA
PROTEIN sequence
Length: 93
LFGVIIIPDAVYNELTTGSFEVSADKVDSILITTAATITTDAIEFAVENNIDIVFLDFNKNPYGRVWHSKLGSTTLIRRRQLEAEASAYVIG*