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RifSed_csp2_16ft_3_scaffold_39937_1

Organism: RifSed_csp2_16ft_3_Methanoperedens_45_12

near complete RP 32 / 55 MC: 3 BSCG 28 / 51 ASCG 37 / 38 MC: 1
Location: 2..1147

Top 3 Functional Annotations

Value Algorithm Source
Type I restriction-modification system specificity subunit Tax=Pseudomonas putida TRO1 RepID=N9W079_PSEPU similarity UNIREF
DB: UNIREF100
  • Identity: 48.9
  • Coverage: 307.0
  • Bit_score: 279
  • Evalue 4.10e-72
Type I restriction-modification system specificity subunit {ECO:0000313|EMBL:ENY76941.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida TRO1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 48.9
  • Coverage: 307.0
  • Bit_score: 279
  • Evalue 5.80e-72
restriction modification system DNA specificity domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 35.4
  • Coverage: 345.0
  • Bit_score: 204
  • Evalue 2.80e-50

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Taxonomy

Pseudomonas putida → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1146
GATTGCGAAGCTGCTGGAGGGAGTAGAGTGAGACAAATCCCTGAAGTTGTTCTTGGCAAAATCGCCACGATTACGATGGGAACATCACCCAAAGGAGAAAACTATAACTCCGAAGGCAATGGAATGCCATTACTGAATTGGGCTGACAAACAATATTCCTTAGGGCGCGGTGTATGCTCAATTCGTGGTGCAACGCCAATGGATACAAAGTACATTAGGTATTGCATCGAGCTAAAATTAGGTGCACTTCTCAAGTTATCTGGTGGAGCAACATTCCCTAACCTTACAGGTAATGATCTCTCCACATTTTCTATTCCTTACCCACCACACCGATATAAAATCGCCGCCATCCTCTCAGCCTACGATGACCTCATCGAGAACAACATGCGGCGCATCAGGATACTGGAAGAGATGGCGCAGATACTCTACCGCGAGTGGTTCGTGAAGTTTCGGTTTCCGGGGCATGAGAAGGTAAGGATGGTGGAGTCGGAGATCGGGATTGTGCCGGAGGGGTGGGAAGTGAAGAAGTTGGGGGATGTGGTTACTCTGCATCGTGGAAAATCTTATCGGACTCCCGACTTAGTGGATGAGGGTGGGATACCGTTTTTGAATCTAAAATGCATCGAACGTGGTGGCGGTTTCCGTTACGATGGCGTCAAACGATTTCAGGGAGAATATAAACCTACTCAAACAGCGAAAACAGGTGACATAATTGTAGCAGTCACTGATATGACACAAGAAAGGCGGCTTGTAGCACATGCGGCGCGTGTCCATATAATTGGTAATGATTTTGCAGTCATGTCTATGGATTTGGTAAAAATCGAACCTAACACAGAGGTCTCGAAAGACTATTTGCATGGCGTGTTGCGCTTCTCAGATTTCTCTCAAGAGGTACGCCAACATGCAAACGGTGTGAATGTGCTTCATTTAAATCCAAGCCAAATACAAGAGTTTAAGTTTGCTTTGCCGCCAACTGAATTAAGAAATCTTTACGCTGAGTTATGCGCCAGCGCATATCAAGAATGTGATGTATTGCACGCAAAGAACGCCAACCTCCGCCGCACCCGCGACCTGCTGCTGCCCAAGCTCATCTCAGGCGAGGTGGATGTGGAAAAAATTGAAATTCGGATGTCGGATAGGAGGTAG
PROTEIN sequence
Length: 382
DCEAAGGSRVRQIPEVVLGKIATITMGTSPKGENYNSEGNGMPLLNWADKQYSLGRGVCSIRGATPMDTKYIRYCIELKLGALLKLSGGATFPNLTGNDLSTFSIPYPPHRYKIAAILSAYDDLIENNMRRIRILEEMAQILYREWFVKFRFPGHEKVRMVESEIGIVPEGWEVKKLGDVVTLHRGKSYRTPDLVDEGGIPFLNLKCIERGGGFRYDGVKRFQGEYKPTQTAKTGDIIVAVTDMTQERRLVAHAARVHIIGNDFAVMSMDLVKIEPNTEVSKDYLHGVLRFSDFSQEVRQHANGVNVLHLNPSQIQEFKFALPPTELRNLYAELCASAYQECDVLHAKNANLRRTRDLLLPKLISGEVDVEKIEIRMSDRR*