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BSR_inoc_136475

Search features with annotation key words

Displaying items 1-30 of 132 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BSR_inoc_136475_1
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(173..427)
DNA (255bp) protein (85aa)
Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LWZ8_SYNAS
cytoplasmic protein
Hypothetical cytosolic protein {ECO:0000313|EMBL:ABC78607.1}; TaxID=56780 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
BSR_inoc_136475_2
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1965..2246)
DNA (282bp) protein (94aa)
Helix-turn-helix domain protein n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DCX5_9GAMM
XRE family transcriptional regulator
Tax=CG_Thiomicrospira_01
BSR_inoc_136475_3
Vibrio scophthalmi, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2224..2568)
DNA (345bp) protein (115aa)
Putative toxin component n=1 Tax=Vibrio scophthalmi RepID=G8ZCY8_9VIBR
Putative toxin component {ECO:0000313|EMBL:CCD10424.1}; TaxID=45658 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio scophthalmi.;"
hypothetical protein
BSR_inoc_136475_4
Mannheimia haemolytica, Mannheimia, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2606..2896)
DNA (291bp) protein (97aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=1450449 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia.;" source="Mannheimia haemolytica serotype A1/A6 str. PKL10.;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) RepID=A6VNV6_ACTSZ
CRISPR-associated protein Cas2
BSR_inoc_136475_5
Bibersteinia trehalosi, Bibersteinia, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2910..3929)
DNA (1020bp) protein (340aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1263832 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Bibersteinia.;" source="Bibersteinia trehalosi USDA-ARS-USMARC-190.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Pasteurella bettyae CCUG 2042 RepID=I3DIM5_9PAST
CRISPR-associated protein Cas1
BSR_inoc_136475_6
Marinobacter sp. C1S70, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3910..4548)
DNA (639bp) protein (213aa)
CRISPR-associated protein Cas4 n=1 Tax=Marinobacter sp. C1S70 RepID=U7NXH8_9ALTE
CRISPR-associated protein Cas4 {ECO:0000313|EMBL:ERS87972.1}; TaxID=1396859 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. C1S70.;"
CRISPR-associated RecB family exonuclease Cas4b
BSR_inoc_136475_7
Rheinheimera nanhaiensis, Rheinheimera, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4551..5390)
DNA (840bp) protein (280aa)
CRISPR-associated protein n=1 Tax=Rheinheimera nanhaiensis E407-8 RepID=I1E2P3_9GAMM
CRISPR-associated protein {ECO:0000313|EMBL:GAB60571.1}; TaxID=562729 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Rheinheimera.;" source="Rheinheimera nanhaiensis E407-8.;"
csd2; CRISPR-associated protein
BSR_inoc_136475_8
Rheinheimera nanhaiensis, Rheinheimera, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5408..7336)
DNA (1929bp) protein (643aa)
CRISPR-associated protein n=1 Tax=Rheinheimera nanhaiensis E407-8 RepID=I1E2P4_9GAMM
CRISPR-associated protein {ECO:0000313|EMBL:GAB60572.1}; TaxID=562729 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Rheinheimera.;" source="Rheinheimera nanhaiensis E407-8.;"
csd; CRISPR-associated protein, Csd1 family
BSR_inoc_136475_9
Providencia burhodogranariea, Providencia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7333..8049)
DNA (717bp) protein (239aa)
CRISPR-associated protein Cas5 n=1 Tax=Providencia burhodogranariea DSM 19968 RepID=K8WSH2_9ENTR
CRISPR-associated protein Cas5 {ECO:0000313|EMBL:EKT63594.1}; TaxID=1141662 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Providencia.;" source="Providencia burhodogranariea DSM 19968.;"
CRISPR-associated protein Cas5
BSR_inoc_136475_10
BJP_08E140C01_10KDA_Methylophilales_47_88, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8064..10508)
DNA (2445bp) protein (815aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI00035E6103
cas; CRISPR-associated helicase Cas3 domain-containing protein
Tax=BJP_08E140C01_10KDA_Methylophilales_47_88
BSR_inoc_136475_11
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10873..11850)
DNA (978bp) protein (326aa)
Helix-turn-helix type 11 domain protein n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DCY6_9GAMM
DeoR faimly transcriptional regulator
DeoR faimly transcriptional regulator {ECO:0000313|EMBL:AHF01510.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
BSR_inoc_136475_12
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11998..12333
DNA (336bp) protein (112aa)
Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DAC7_THICA
histone family protein nucleoid-structuring protein H-NS
Histone family protein nucleoid-structuring protein H-NS {ECO:0000313|EMBL:AEG31093.1}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
BSR_inoc_136475_13
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12486..12983)
DNA (498bp) protein (166aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
Dihydrofolate reductase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DCN9_9GAMM
diacylglycerol kinase
BSR_inoc_136475_14
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12980..13813)
DNA (834bp) protein (278aa)
thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008};; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
Thymidylate synthase n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DAC5_THICA
BSR_inoc_136475_15
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13861..15390)
DNA (1530bp) protein (510aa)
Deoxyribodipyrimidine photolyase-related protein n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8T8_9GAMM
deoxyribodipyrimidine photo-lyase
Deoxyribodipyrimidine photo-lyase {ECO:0000313|EMBL:AHF00518.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
BSR_inoc_136475_16
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15747..17300)
DNA (1554bp) protein (518aa)
DNA photolyase FAD-binding n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8U0_9GAMM
DNA photolyase
DNA photolyase {ECO:0000313|EMBL:AHF00516.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
BSR_inoc_136475_17
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

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comp(17681..17941)
DNA (261bp) protein (87aa)
Putative uncharacterized protein (Fragment) id=2283791 bin=GWB2_Nitrospirae_rel_47_37 species=Acidithiobacillus sp. GGI-221 genus=Acidithiobacillus taxon_order=Acidithiobacillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
hypothetical protein
Tax=GWB2_Nitrospirae_47_37_curated
BSR_inoc_136475_18
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18248..18463)
DNA (216bp) protein (72aa)
Integrase catalytic subunit n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DD50_9GAMM
integrase
Integrase {ECO:0000313|EMBL:AHF01962.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
BSR_inoc_136475_19
RIFOXYB12_FULL_Gallionellales_54_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18582..18830)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DP16_9BACT
hypothetical protein
Tax=RIFOXYB12_FULL_Gallionellales_54_9_curated
BSR_inoc_136475_20
BJP_IG2158_Methylococcales_50_91, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18939..19205)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DP16_9BACT
hypothetical protein
Tax=BJP_IG2158_Methylococcales_50_91
BSR_inoc_136475_21
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19913..20143)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DP16_9BACT
phage protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
BSR_inoc_136475_22
unknown

Not on your lists

comp(20452..20751)
DNA (300bp) protein (100aa)

This feature has no annotations

BSR_inoc_136475_23
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20970..22037)
DNA (1068bp) protein (356aa)
Porin Gram-negative type n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DAR2_9GAMM
porin
Porin {ECO:0000313|EMBL:AHF01964.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
BSR_inoc_136475_24
Sulfurovum sp. PC08-66, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22631..23488)
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Thiothrix flexilis RepID=UPI000365B099
Uncharacterized protein {ECO:0000313|EMBL:KIM07415.1}; TaxID=1539063 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. PC08-66.;"
hypothetical protein
BSR_inoc_136475_25
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23627..24688)
DNA (1062bp) protein (354aa)
murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000255|HAMAP-Rule:MF_00033}; EC=2.4.1.227 {ECO:0000255|HAMAP-Rule:MF_00033};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000255|HAMAP-Rule:MF_00033}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00037F204F
BSR_inoc_136475_26
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24675..25862)
DNA (1188bp) protein (396aa)
Lipid II flippase FtsW n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=FTSW_THICR
Putative lipid II flippase FtsW {ECO:0000256|HAMAP-Rule:MF_00913}; Cell division protein FtsW {ECO:0000256|HAMAP-Rule:MF_00913}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
cell cycle protein
BSR_inoc_136475_27
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25859..27205)
DNA (1347bp) protein (449aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DCR9_9GAMM
UDP-N-acetylmuramoylalanine ligase
BSR_inoc_136475_28
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27212..28294)
DNA (1083bp) protein (361aa)
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DCR8_9GAMM
BSR_inoc_136475_29
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28278..29672)
DNA (1395bp) protein (465aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31I63_THICR
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
BSR_inoc_136475_30
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29654..31099)
DNA (1446bp) protein (482aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31I64_THICR
UDP-N-acetylmuramyl tripeptide synthetase
Displaying items 1-30 of 132 in total

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