ggKbase home page

BSR_Lac_UAPBR_effluent_at_60264_17

Organism: BSR_Lac_UAPBR_effluent_at_Firmicutes_59_13

near complete RP 46 / 55 BSCG 50 / 51 MC: 1 ASCG 14 / 38
Location: comp(20667..21287)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D220_VARPS similarity UNIREF
DB: UNIREF100
  • Identity: 36.8
  • Coverage: 204.0
  • Bit_score: 132
  • Evalue 2.60e-28
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 36.8
  • Coverage: 204.0
  • Bit_score: 132
  • Evalue 7.30e-29
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACS22940.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 36.8
  • Coverage: 204.0
  • Bit_score: 132
  • Evalue 3.60e-28

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 621
TTGTTGGCGGGTTCGGAGTGGGCATACATGTCCGATGGCGATCTTGCGCGCCGAGCCGCTCTGGGCTCGCAGGATGCCTACTCCGAACTTGTACGGAGGCATTCGAAGAAGTTGCTTGATCTGGCATGGCGGATGACCGGTTCTGAAGAGTCCGCGCGGGACGCGGTGCAGGAAGCTCTCCTCGCGGGATGGAGGGGCGTCGGCGAATTCCGAGGCGAGGCCGAGTTCTACTCCTGGATCCGACGGATATTGGTGAACGCGATCATGGGTCAATTCCGGAAGGAAGGTCGAAACAAGGCCGCCACGGTATCGCTGGATATGCCTGCGTCTTCAGGCGAGTCGGGCGAACCGCTTCACCTTCAGGTGGAAGACGAAGGCTCTGACCCTCAGGACGTTGTGGGCCGGATTGAGACGGCCCGGGAGATAAGGAAGGCAGTCGCCAGACTGCCCGACATCTACAGAACGGTGTTTCTCCTGCGTGAGACGGAACTGATGAGCTACTCGCAGATTGCCGGCGTTCTTGGCATTGCGGAAGGGACAGTGAAATCCAGGCTGAACATGGCCAGGCGGATGCTTAGGGAAATTCTGGGCGAGGAGGTGAAGGCTGCGCGGTTCGGGTGA
PROTEIN sequence
Length: 207
LLAGSEWAYMSDGDLARRAALGSQDAYSELVRRHSKKLLDLAWRMTGSEESARDAVQEALLAGWRGVGEFRGEAEFYSWIRRILVNAIMGQFRKEGRNKAATVSLDMPASSGESGEPLHLQVEDEGSDPQDVVGRIETAREIRKAVARLPDIYRTVFLLRETELMSYSQIAGVLGIAEGTVKSRLNMARRMLREILGEEVKAARFG*