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CN-SCN_Bordetella_23x

CN-SCN_Burkholderiales_67_23
In projects: CN-SCN

Consensus taxonomy: Burkholderiales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 22.82 Longest contig: 166.52 Kbp Bin length: 6.73 Mbp GC content: 67.22 %
Contigs count: 187 Features count: 6544 rRNAs count: 0 tRNAs count: 52

Genome completeness

near complete RP 51 / 55 MC: 7 BSCG 49 / 51 MC: 4 ASCG 12 / 38 MC: 2

Description

Partial double 67

Displaying items 1-50 of 187 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_113 BURK23_1
Order: Burkholderiales (76.58%)
158 166523 bp 66.50 20.55 90.95
cn_combo_scaffold_143 BURK23_2
Order: Burkholderiales (68.18%)
154 162375 bp 66.52 20.27 92.15
cn_combo_scaffold_650 BURK23_23
Order: Burkholderiales (64.14%)
145 154379 bp 68.20 22.83 94.07
cn_combo_scaffold_302 BURK23_6
Order: Burkholderiales (65.97%)
144 143174 bp 66.76 20.74 94.17
cn_combo_scaffold_193 BURK23_3
Order: Burkholderiales (52.67%)
131 130661 bp 66.53 20.91 93.59
cn_combo_scaffold_450 BURK23_11
Order: Burkholderiales (69.05%)
126 138283 bp 65.05 21.07 91.90
cn_combo_scaffold_212 BURK23_4
Order: Burkholderiales (77.05%)
122 134998 bp 67.52 20.44 93.57
cn_combo_scaffold_976 BURK23_40
Order: Burkholderiales (66.1%)
118 125043 bp 66.80 23.54 88.79
cn_combo_scaffold_286 BURK23_5
Order: Burkholderiales (66.35%)
104 108093 bp 68.02 25.15 93.73
cn_combo_scaffold_781 BURK23_28
Genus: Herbaspirillum (58.65%)
104 100635 bp 66.06 22.31 91.44
cn_combo_scaffold_320 BURK23_7
Order: Burkholderiales (83.33%)
96 101539 bp 68.13 22.77 93.22
cn_combo_scaffold_701 BURK23_25
Order: Burkholderiales (65.26%)
95 101573 bp 68.22 23.22 93.62
cn_combo_scaffold_702 BURK23_24
Order: Burkholderiales (83.33%)
90 98805 bp 67.74 23.04 93.51
cn_combo_scaffold_900 BURK23_34
Order: Burkholderiales (71.43%)
84 79835 bp 67.93 24.06 91.57
cn_combo_scaffold_979 BURK23_38
Order: Burkholderiales (64.29%)
84 91012 bp 67.58 20.34 94.17
cn_combo_scaffold_396 BURK23_8
Order: Burkholderiales (60.24%)
83 90086 bp 67.70 24.32 93.62
cn_combo_scaffold_1824 BURK23_77
Order: Burkholderiales (57.32%)
82 81728 bp 68.34 25.38 91.97
cn_combo_scaffold_749 BURK23_27
Order: Burkholderiales (60.49%)
81 85054 bp 67.51 23.74 93.18
cn_combo_scaffold_498 BURK23_12
Order: Burkholderiales (67.95%)
78 85573 bp 66.02 21.43 89.50
cn_combo_scaffold_823 BURK23_29
Order: Burkholderiales (74.36%)
78 83089 bp 67.68 21.73 92.04
cn_combo_scaffold_1015 BURK23_41
Order: Burkholderiales (66.23%)
77 81723 bp 67.69 22.73 95.04
cn_combo_scaffold_545 BURK23_13
Order: Burkholderiales (65.33%)
75 73551 bp 68.53 24.50 95.38
cn_combo_scaffold_435 BURK23_9
Order: Burkholderiales (83.78%)
74 84155 bp 66.26 24.13 90.45
cn_combo_scaffold_468 BURK23_10
Order: Burkholderiales (77.03%)
74 80242 bp 68.70 23.94 94.28
cn_combo_scaffold_623 BURK23_14
Order: Burkholderiales (79.45%)
73 68683 bp 68.17 23.82 94.31
cn_combo_scaffold_1351 BURK23_53
Class: Betaproteobacteria (67.16%)
67 67644 bp 67.48 21.67 94.28
cn_combo_scaffold_708 BURK23_21
Order: Burkholderiales (72.31%)
65 61472 bp 67.27 21.02 94.16
cn_combo_scaffold_726 BURK23_26
Order: Burkholderiales (61.54%)
65 74766 bp 67.95 23.29 94.23
cn_combo_scaffold_678 BURK23_17
Order: Burkholderiales (59.38%)
64 62784 bp 64.78 23.67 89.83
cn_combo_scaffold_888 BURK23_33
Order: Burkholderiales (59.38%)
64 63638 bp 67.74 22.81 93.02
cn_combo_scaffold_687 BURK23_18
Order: Burkholderiales (69.84%)
63 70885 bp 68.80 22.79 93.12
cn_combo_scaffold_666 BURK23_16
Order: Burkholderiales (75.81%)
62 63478 bp 69.31 24.71 96.17
cn_combo_scaffold_1442 BURK23_57
Order: Burkholderiales (72.58%)
62 65223 bp 67.63 21.46 92.12
cn_combo_scaffold_714 BURK23_22
Order: Burkholderiales (73.33%)
60 61202 bp 66.81 25.93 91.56
cn_combo_scaffold_697 BURK23_19
Class: Betaproteobacteria (59.32%)
59 61974 bp 67.02 20.87 94.01
cn_combo_scaffold_700 BURK23_20
Order: Burkholderiales (59.32%)
59 61933 bp 68.29 25.80 92.97
cn_combo_scaffold_1309 BURK23_48
Order: Burkholderiales (78.95%)
57 58376 bp 65.23 21.60 94.55
cn_combo_scaffold_856 BURK23_31
Class: Betaproteobacteria (58.18%)
55 58563 bp 64.20 21.11 93.17
cn_combo_scaffold_944 BURK23_36
Order: Burkholderiales (62.96%)
54 51097 bp 66.75 21.48 92.64
cn_combo_scaffold_868 BURK23_32
Order: Burkholderiales (68.63%)
51 54206 bp 66.16 23.62 94.96
cn_combo_scaffold_1694 BURK23_66
Order: Burkholderiales (56.86%)
51 52646 bp 68.88 23.03 93.72
cn_combo_scaffold_999 BURK23_37
Order: Burkholderiales (66%)
50 48249 bp 62.87 25.49 96.15
cn_combo_scaffold_2195 BURK23_87
Order: Burkholderiales (75%)
48 49351 bp 66.54 21.86 95.12
cn_combo_scaffold_864 BURK23_30
Order: Burkholderiales (91.49%)
47 54301 bp 67.11 21.69 93.53
cn_combo_scaffold_935 BURK23_35
Order: Burkholderiales (61.7%)
47 52989 bp 68.74 20.39 94.85
cn_combo_scaffold_1192 BURK23_46
Order: Burkholderiales (63.83%)
47 41649 bp 65.61 19.04 96.47
cn_combo_scaffold_662 BURK23_15
Phylum: Proteobacteria (97.83%)
46 63674 bp 67.05 21.77 94.92
cn_combo_scaffold_1029 BURK23_39
Order: Burkholderiales (68.89%)
45 47009 bp 67.36 20.02 93.90
cn_combo_scaffold_1117 BURK23_44
Order: Burkholderiales (71.11%)
45 46093 bp 68.69 24.31 93.12
cn_combo_scaffold_1337 BURK23_52
Order: Burkholderiales (73.33%)
45 47343 bp 68.10 26.27 94.35
Displaying items 1-50 of 187 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.