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CN-SCN_Lautropia_89x

CN-SCN_Burkholderiales_69_89
In projects: CN-SCN  |  SCN_92

Consensus taxonomy: Burkholderiales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 88.98 Longest contig: 262.28 Kbp Bin length: 3.81 Mbp GC content: 69.04 %
Contigs count: 70 Features count: 3732 rRNAs count: 1 tRNAs count: 38

Genome completeness

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 12 / 38

Description

Full 50

Displaying items 1-50 of 70 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_406 BURK89_8
Class: Betaproteobacteria (75.89%)
253 262282 bp 69.62 89.54 94.67
cn_combo_scaffold_611 BURK89_10
Order: Burkholderiales (66.49%)
188 209793 bp 68.67 84.71 93.37
cn_combo_scaffold_928 BURK89_26
Class: Betaproteobacteria (62.7%)
185 177863 bp 69.06 91.87 92.07
cn_combo_scaffold_255 BURK89_59a
Class: Betaproteobacteria (72.97%)
185 190596 bp 68.26 96.19 92.34
cn_combo_scaffold_148 BURK89_64a
Order: Burkholderiales (51.41%)
177 181937 bp 69.81 88.16 93.23
cn_combo_scaffold_913 BURK89_17
Order: Burkholderiales (69.75%)
119 123958 bp 69.82 92.17 93.52
cn_combo_scaffold_721 BURK89_11
Order: Burkholderiales (52.54%)
118 132503 bp 70.76 85.30 94.12
cn_combo_scaffold_859 BURK89_14
Order: Burkholderiales (56.25%)
112 109696 bp 70.33 90.72 93.68
cn_combo_scaffold_983 BURK89_20
Order: Burkholderiales (53.33%)
105 97720 bp 69.63 91.25 93.81
cn_combo_scaffold_989 BURK89_19
Class: Betaproteobacteria (80.65%)
93 95342 bp 70.22 90.34 93.41
cn_combo_scaffold_424 BURK89_6
Order: Burkholderiales (60.23%)
88 85842 bp 70.36 90.50 96.40
cn_combo_scaffold_775 BURK89_13
Order: Burkholderiales (72.09%)
86 103230 bp 70.57 83.06 94.70
cn_combo_scaffold_960 BURK89_18
Order: Burkholderiales (62.79%)
86 88945 bp 70.23 84.45 93.90
cn_combo_scaffold_786 BURK89_12
Order: Burkholderiales (62.35%)
85 77221 bp 68.74 85.79 93.52
cn_combo_scaffold_416 BURK89_5
Order: Burkholderiales (68.29%)
82 86241 bp 69.80 89.07 94.83
cn_combo_scaffold_544 BURK89_9
Class: Betaproteobacteria (51.95%)
77 79822 bp 66.74 90.19 94.20
cn_combo_scaffold_1372 BURK89_33
Class: Betaproteobacteria (71.23%)
73 67957 bp 69.88 90.78 93.69
cn_combo_scaffold_1237 BURK89_30
Order: Burkholderiales (54.17%)
72 76831 bp 70.80 88.68 95.25
cn_combo_scaffold_2226 BURK89_43
Species: Burkholderia vietnamiensis (72.06%)
68 56517 bp 61.39 72.10 93.73
cn_combo_scaffold_1793 BURK89_39
Order: Burkholderiales (53.97%)
63 56881 bp 69.13 90.36 93.90
cn_combo_scaffold_1083 BURK89_22
Order: Burkholderiales (62.9%)
62 57962 bp 71.66 86.77 94.40
cn_combo_scaffold_622 BURK89_60a
Class: Betaproteobacteria (55%)
60 66254 bp 69.23 93.09 93.99
cn_combo_scaffold_527 BURK89_7
Class: Betaproteobacteria (55.93%)
59 74642 bp 64.81 94.50 91.41
cn_combo_scaffold_926 BURK89_15
Order: Burkholderiales (56.36%)
55 65486 bp 70.82 91.73 95.40
cn_combo_scaffold_2797 BURK89_47
Order: Burkholderiales (70.37%)
54 57531 bp 71.02 77.78 92.45
cn_combo_scaffold_2103 BURK89_62a
Class: Betaproteobacteria (83.33%)
54 52031 bp 69.52 89.68 94.27
cn_combo_scaffold_2094 BURK89_42
Class: Betaproteobacteria (77.36%)
53 55562 bp 70.39 87.67 94.54
cn_combo_scaffold_1041 BURK89_21
Order: Burkholderiales (51.02%)
49 48940 bp 70.11 90.77 90.83
cn_combo_scaffold_1088 BURK89_23
Order: Burkholderiales (63.27%)
49 56325 bp 67.83 86.97 92.22
cn_combo_scaffold_1695 BURK89_36
Order: Burkholderiales (71.43%)
49 49940 bp 69.94 88.62 91.98
cn_combo_scaffold_1978 BURK89_41
Order: Burkholderiales (63.83%)
47 49724 bp 69.77 89.34 95.62
cn_combo_scaffold_768 BURK89_61a
Class: Betaproteobacteria (65.96%)
47 58297 bp 69.53 88.18 96.28
cn_combo_scaffold_1215 BURK89_28
Order: Burkholderiales (66.67%)
45 42505 bp 68.63 83.83 93.67
cn_combo_scaffold_3175 BURK89_65b
Class: Betaproteobacteria (82.93%)
41 39957 bp 69.60 85.66 92.73
cn_combo_scaffold_3062 BURK89_63a
Class: Betaproteobacteria (78.05%)
41 33880 bp 69.35 90.06 90.34
cn_combo_scaffold_1236 BURK89_29
Order: Burkholderiales (57.5%)
40 40562 bp 69.26 91.04 94.28
cn_combo_scaffold_2502 BURK89_70c
Order: Burkholderiales (52.78%)
36 38874 bp 64.38 112.69 86.15
cn_combo_scaffold_1339 BURK89_31
Order: Burkholderiales (62.86%)
35 38274 bp 70.33 87.95 93.75
cn_combo_scaffold_1784 BURK89_38
Order: Burkholderiales (64.71%)
34 30035 bp 69.80 70.81 92.11
cn_combo_scaffold_3311 BURK89_53
Order: Burkholderiales (78.79%)
33 17741 bp 67.20 99.50 90.77
cn_combo_scaffold_1731 BURK89_37
Order: Burkholderiales (79.31%)
29 30765 bp 62.69 88.54 88.96
cn_combo_scaffold_4541 BURK89_60b
Order: Burkholderiales (60.71%)
28 26961 bp 69.47 92.44 91.37
cn_combo_scaffold_2162 BURK89_70a
Class: Betaproteobacteria (67.86%)
28 27748 bp 69.07 96.80 93.37
cn_combo_scaffold_1929 BURK89_40
Order: Burkholderiales (57.69%)
26 28264 bp 69.13 88.24 94.65
cn_combo_scaffold_2426 BURK89_44
Order: Burkholderiales (88%)
25 22681 bp 70.75 88.85 94.22
cn_combo_scaffold_2603 BURK89_45
Class: Betaproteobacteria (63.64%)
22 24214 bp 70.28 87.56 95.05
cn_combo_scaffold_2614 BURK89_46
Order: Burkholderiales (81.82%)
22 21921 bp 70.23 85.03 89.46
cn_combo_scaffold_3098 BURK89_50
Order: Burkholderiales (57.14%)
21 18369 bp 58.98 96.90 89.17
cn_combo_scaffold_3817 BURK89_55
Order: Burkholderiales (80%)
20 22315 bp 69.99 89.84 94.39
cn_combo_scaffold_3852 BURK89_57
Order: Burkholderiales (89.47%)
19 15069 bp 68.52 92.59 89.69
Displaying items 1-50 of 70 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.