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CN-SCN_Eukaryote_25x

CN-SCN_unknown_57_26
In projects: CN-SCN

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 25.98 Longest contig: 102.74 Kbp Bin length: 9.51 Mbp GC content: 56.71 %
Contigs count: 749 Features count: 11462 rRNAs count: 0 tRNAs count: 52

Genome completeness

partial RP 37 / 55 MC: 18 BSCG 10 / 51 MC: 4 ASCG 21 / 38 MC: 10
Displaying items 1-50 of 749 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_779 EUK25_11 123 79123 bp 58.29 27.77 64.24
cn_combo_scaffold_353 EUK25_1 118 95961 bp 59.91 28.07 69.42
cn_combo_scaffold_452 EUK25_2 116 82973 bp 53.31 24.76 60.02
cn_combo_scaffold_727 EUK25_9 115 77278 bp 57.62 27.64 59.64
cn_combo_scaffold_742 EUK25_10 112 81620 bp 58.80 28.21 71.31
cn_combo_scaffold_940 EUK25_16 98 102742 bp 58.38 26.55 74.02
cn_combo_scaffold_476 EUK25_3 96 79786 bp 58.57 27.93 67.47
cn_combo_scaffold_981 EUK25_17 92 80112 bp 59.67 28.15 77.69
cn_combo_scaffold_484 EUK25_4 90 78682 bp 56.26 26.46 61.39
cn_combo_scaffold_673 EUK25_7 83 63158 bp 59.25 26.64 72.67
cn_combo_scaffold_690 EUK25_8 79 62173 bp 57.69 29.52 63.47
cn_combo_scaffold_555 EUK25_5 78 72654 bp 57.80 28.38 59.57
cn_combo_scaffold_645 EUK25_6 77 65074 bp 56.41 27.41 67.00
cn_combo_scaffold_1038 EUK25_20 71 70205 bp 56.61 27.71 61.48
cn_combo_scaffold_821 EUK25_12 68 55962 bp 58.58 28.91 72.21
cn_combo_scaffold_919 EUK25_14 65 52136 bp 59.73 27.14 73.03
cn_combo_scaffold_1054 EUK25_21 65 56765 bp 58.65 26.83 70.71
cn_combo_scaffold_1149 EUK25_689 62 48450 bp 59.96 42.50 72.82
cn_combo_scaffold_2388 EUK25_76 61 44110 bp 58.67 35.55 77.16
cn_combo_scaffold_1495 EUK25_41 60 34324 bp 57.67 27.48 70.11
cn_combo_scaffold_1055 EUK25_22 59 50986 bp 60.09 27.70 73.82
cn_combo_scaffold_1086 EUK25_23 58 46690 bp 58.54 27.50 69.19
cn_combo_scaffold_1140 EUK25_25 57 42893 bp 59.50 27.46 68.47
cn_combo_scaffold_1198 EUK25_30 56 52843 bp 58.54 27.26 66.26
cn_combo_scaffold_1200 EUK25_28 55 41435 bp 58.00 28.43 62.74
cn_combo_scaffold_1087 EUK25_24 52 45053 bp 57.79 30.68 66.95
cn_combo_scaffold_1205 EUK25_29 52 41293 bp 57.79 28.14 68.88
cn_combo_scaffold_1292 EUK25_32 52 39294 bp 55.74 28.41 63.09
cn_combo_scaffold_1329 EUK25_34 52 38511 bp 55.68 27.52 69.64
cn_combo_scaffold_1657 EUK25_45 51 31715 bp 58.59 27.33 70.77
cn_combo_scaffold_1790 EUK25_49 49 31719 bp 58.22 26.93 63.51
cn_combo_scaffold_967 EUK25_15 47 49728 bp 56.19 25.72 64.61
cn_combo_scaffold_3344 EUK25_120 46 31515 bp 55.55 26.63 73.37
cn_combo_scaffold_1673 EUK25_46 45 31580 bp 57.82 28.32 72.23
cn_combo_scaffold_1587 EUK25_42 44 32738 bp 60.09 26.93 74.78
cn_combo_scaffold_1028 EUK25_18 44 47034 bp 60.39 27.78 75.82
cn_combo_scaffold_1043 EUK25_19 44 46538 bp 56.29 26.48 61.20
cn_combo_scaffold_1143 EUK25_26 44 43137 bp 60.66 26.70 78.35
cn_combo_scaffold_1369 EUK25_35 43 37419 bp 56.89 27.26 59.42
cn_combo_scaffold_1181 EUK25_27 42 41904 bp 57.23 27.60 70.73
cn_combo_scaffold_2148 EUK25_61 41 25501 bp 57.33 28.36 67.75
cn_combo_scaffold_2329 EUK25_71 41 30317 bp 57.85 26.57 70.79
cn_combo_scaffold_2931 EUK25_103 41 32191 bp 51.14 25.33 61.61
cn_combo_scaffold_1809 EUK25_50 40 29799 bp 57.75 27.22 67.71
cn_combo_scaffold_1935 EUK25_53 39 28124 bp 57.05 26.42 54.82
cn_combo_scaffold_2497 EUK25_80 39 49760 bp 60.15 27.20 81.23
cn_combo_scaffold_1394 EUK25_37 39 37241 bp 56.46 26.74 65.39
cn_combo_scaffold_1876 EUK25_52 37 28916 bp 56.45 26.72 50.33
cn_combo_scaffold_1943 EUK25_54 37 28027 bp 59.76 14.28 94.12
cn_combo_scaffold_2151 EUK25_62 37 25422 bp 54.24 25.15 65.28
Displaying items 1-50 of 749 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.