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CN-SCN_Eukaryote_66x

CN-SCN_unknown_62_65
In projects: CN-SCN

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 64.86 Longest contig: 337.33 Kbp Bin length: 34.92 Mbp GC content: 61.88 %
Contigs count: 714 Features count: 16776 rRNAs count: 1 tRNAs count: 147

Genome completeness

partial RP 48 / 55 MC: 34 BSCG 21 / 51 MC: 3 ASCG 27 / 38 MC: 14
Displaying items 1-50 of 714 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_169 EUK65_42 127 337331 bp 60.01 74.20 84.92
cn_combo_scaffold_66 EUK65_4 126 334526 bp 64.23 62.68 78.97
cn_combo_scaffold_129 EUK65_12 115 249426 bp 61.39 65.68 77.98
cn_combo_scaffold_184 EUK65_23 108 179908 bp 62.02 66.02 73.87
cn_combo_scaffold_366 EUK65_78 107 182146 bp 60.56 64.98 72.29
cn_combo_scaffold_305 EUK65_64 97 181757 bp 61.72 65.07 74.61
cn_combo_scaffold_146 EUK65_15 96 168010 bp 61.99 64.09 81.26
cn_combo_scaffold_326 EUK65_671a 95 220566 bp 63.79 66.31 81.71
cn_combo_scaffold_107 EUK65_5 94 191347 bp 60.88 66.40 73.83
cn_combo_scaffold_222 EUK65_36 90 185085 bp 61.61 65.44 80.83
cn_combo_scaffold_323 EUK65_66 88 138219 bp 59.55 66.65 71.51
cn_combo_scaffold_449 EUK65_104 88 187809 bp 61.98 65.70 78.92
cn_combo_scaffold_114 EUK65_6 87 165813 bp 61.54 65.91 77.24
cn_combo_scaffold_213 EUK65_33 86 206659 bp 61.92 65.32 79.73
cn_combo_scaffold_159 EUK65_16 85 144168 bp 60.24 66.75 72.49
cn_combo_scaffold_329 EUK65_63 82 112698 bp 60.36 66.14 71.25
cn_combo_scaffold_104 EUK65_9 81 282264 bp 65.00 59.41 83.23
cn_combo_scaffold_124 EUK65_11 81 219224 bp 62.31 65.45 78.04
cn_combo_scaffold_152 EUK65_13 78 146382 bp 59.29 64.85 79.71
cn_combo_scaffold_264 EUK65_55 78 177177 bp 63.96 64.52 78.54
cn_combo_scaffold_141 EUK65_14 77 203287 bp 63.95 63.87 79.08
cn_combo_scaffold_219 EUK65_29 77 122548 bp 62.61 65.32 77.96
cn_combo_scaffold_404 EUK65_89 77 171168 bp 59.08 66.94 76.86
cn_combo_scaffold_162 EUK65_18 76 141137 bp 58.88 66.84 77.76
cn_combo_scaffold_327 EUK65_61 75 100381 bp 56.93 66.75 71.91
cn_combo_scaffold_547 EUK65_120 74 118224 bp 62.53 63.58 77.26
cn_combo_scaffold_99 EUK65_3 73 187283 bp 61.70 66.43 81.61
cn_combo_scaffold_274 EUK65_52 72 150938 bp 62.42 65.90 77.08
cn_combo_scaffold_710 EUK65_161 71 123496 bp 58.46 63.49 65.34
cn_combo_scaffold_71 EUK65_2 71 249647 bp 60.93 63.21 85.92
cn_combo_scaffold_119 EUK65_8 69 161399 bp 60.27 63.01 77.35
cn_combo_scaffold_367 EUK65_76 69 178550 bp 60.95 66.05 78.26
cn_combo_scaffold_688 EUK65_164 68 149177 bp 61.40 66.33 78.87
cn_combo_scaffold_210 EUK65_24 68 125250 bp 59.81 65.67 77.49
cn_combo_scaffold_243 EUK65_38 68 117441 bp 59.74 66.83 65.60
cn_combo_scaffold_538 EUK65_115 68 100726 bp 55.70 65.06 67.91
cn_combo_scaffold_117 EUK65_7 67 162195 bp 62.17 64.52 76.94
cn_combo_scaffold_174 EUK65_20 67 137449 bp 65.56 62.15 80.67
cn_combo_scaffold_125 EUK65_10 66 172255 bp 64.22 64.66 84.27
cn_combo_scaffold_249 EUK65_40 66 116897 bp 59.02 64.68 70.29
cn_combo_scaffold_402 EUK65_87 66 158660 bp 61.96 63.64 75.11
cn_combo_scaffold_461 EUK65_95 66 102933 bp 62.85 64.96 80.73
cn_combo_scaffold_187 EUK65_22 65 148397 bp 62.37 64.06 81.28
cn_combo_scaffold_276 EUK65_54 64 192738 bp 66.72 60.36 85.53
cn_combo_scaffold_350 EUK65_69 62 146356 bp 62.45 65.32 78.41
cn_combo_scaffold_205 EUK65_25 61 135776 bp 59.73 65.81 79.32
cn_combo_scaffold_287 EUK65_48 61 108014 bp 59.11 67.82 75.42
cn_combo_scaffold_282 EUK65_47 60 109138 bp 60.49 64.76 77.75
cn_combo_scaffold_59 EUK65_1 59 207624 bp 64.72 63.14 83.20
cn_combo_scaffold_179 EUK65_21 59 135360 bp 61.51 65.35 81.93
Displaying items 1-50 of 714 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.