ggKbase home page

cn_combo_scaffold_1202_30

Organism: CN-SCN_Mesorhizobium_20x

partial RP 41 / 55 MC: 4 BSCG 38 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: comp(29249..31369)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1287274 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriac similarity UNIPROT
DB: UniProtKB
  • Identity: 59.4
  • Coverage: 754.0
  • Bit_score: 764
  • Evalue 1.40e-217
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036FD086 similarity UNIREF
DB: UNIREF100
  • Identity: 75.1
  • Coverage: 768.0
  • Bit_score: 1146
  • Evalue 0.0
RNA-binding S4 domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 59.8
  • Coverage: 692.0
  • Bit_score: 719
  • Evalue 1.10e-204

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Mesorhizobium sp. LNJC394B00 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2121
ATGGACGACGATCGTAAGAAATCCCCGCGCAAAGGCGGCAAACCGGGCGGCGCTGGCAGCCGCGACGCGGGACCCCGGAAATTCGGCAAGCCGAGCGGCGAAGGTGGCGCAAAGCCCTTCGTCAAGAAGCCGTATGCCAAGCGCGCCGAAGGCGCGGAGGGCGGCGACCGGCCGTTCCGCAAGGGTCCGCGCCCCGAAGGCAAGCCGTTCGAGAAGCGCGAACGCTCTTTCGGCGACAAGCCATATCGTCCGCGCGACGGCGAAGCGCGTGCAGAGGGCGGCGACCGTCCGTTCCGCAAGGGCCCGCGCCCCGAAGGCAAGCCCTTCGAGAAGCGCGAAGGCGGCCGTTCATTCGGTGGCGACAAGCCCTACCGTCCGCGTCCCGCCGAAGGCGGCGAGCGTCCGAACCGTGAGTTCCGTCCGCGCGACGGCGAAGCGCGTGCAGAGGGCGGCGACCGTCCGTTCCGCAAGGGCCCGCGCCCGGAAGGCAAGCCTTACGAGAAGCGCGAAGGCGGCCGTTCGTTCGGTGGCGACAAGCCGTATCGTTCGCGTCCTGCAGAAGGCGGCGAGCGCCCGCACCGTGAGTTCCGTCCGCGTGACGGGGAGGCGCGTGCCGAGGGCGGCGACCGTCCGTTCCGCAAGGGGCCGCGTCCCGAGGGCAAGCCTTTCGAAAAGCGTCCTTACGGCGACAAGCCTTACCGTCCTCGTGCCGAGGGTAGCGAAGGCGGCGAGCGCCCGCGCCGCGAGTTCCGCAGCGAAGAGGGCGGCGACCGTCCGTTCCGCAAGGGCCCGCGCCCCGAAGGCAAGCCGTTCGAGAAGCGCGAGCGCACGTTTGGCGACAAGCCGCGCCCCGGCAAGCCTTTCGCGCGCAAGCCTGAGGAGGCGGCCGAGCCGGGCGAGCGCATCGCCAAGCGGCTGGCTCGTGCGGGCATCGCCTCGCGCCGTGACGCCGAGGAACTGATCGCCGCAGGTCGCATCAGGGTCAACGGCCAGGTGCTGTCGTCGCCGGCGTTCAACGTCATGCCGGACGATGTCATCCACCTCGACGGCACCGAGATTCCGCCGATCGAGCGCACGCGCCTGTTCCTGTTCCACAAGCCGGCCGGCGTGGTCACGACCAACCGCGACCCGGAAGGCCGCAAGACGGTGTTCGACGTGTTGCCCGCGGAACTGCCGCGGCTGATGACCATCGGCCGTCTGGACATCAACACCGAAGGCCTGCTGCTTCTCACCAATGACGGCGGCCTGTCGCGCGTGCTCGAACTGCCGGCCACCGGCTGGCTGCGCCGCTATCGCGTGCGGGTCCACGGCAAGGTGGAGCAGAAGCAGTTGGACGAGCTCAAGGACGGCATCGCCGTCGATGGCGTGTTCTACGGCTCGATCGAGGCGACGCTCGACCGCGAGCAAGGCACCAACGCCTGGATCACCATCGGCCTGCGCGAGGGCAAGAACCGCGAGGTCAAGAATATCCTTGGCGCGCTCGGCCTCGAGGTGAACCGCCTGATCCGCATCTCCTACGGCCCGTTCCAGCTCGGCGAGCTGCCGGAGGGCCATGTCCAGGAGATCAAGGGCAAGATGCTGCGCGACCAGCTCGGCGAGCGTCTGGTCGAGGAGTCGGGCGCCAACTTCGACGCCGACATCGTCAAGCCGTTCTCGAACAAGCCGACCGCCCGGCGCGAGGAGCGTCGCGAAGACGATGCGCCGCGTACGCCGCGCGCCGCGCGCCTCGACATCGGCGAGGGCGGCCTCATCAAGAACCGCAAGCGCGACCGCGAACGCCATCGCGAGGATGTTCTCGGCCGCCTGTCGACCGAGCGCCCCAGCTTCGGCGACAAGCCCAGGTTTGGCGATAAGCCGCGCTTCGGGGACAAGCCGAAGTTCGGTGACAAGCCCAAGTTTGGAGACAAGCCGAAGTTCGGTGGCAAGAAGGGGGACGACCGCGAGAAGAAGCCCTTCGAGACGCCGGGCGCGCGCAAGGCCAATGTCTGGATGGCGCCGGGCGCTCGCCCGCAAGGCGCGAACAAGGGCGACAAGCCAGGCTTCGACAAGCCACGCGGTGACCGCCCGGCCGGCGGCGCTCCGCGAGGCGGCAAGCCGGGTCCGCGCAAGGGACGTGGCTGA
PROTEIN sequence
Length: 707
MDDDRKKSPRKGGKPGGAGSRDAGPRKFGKPSGEGGAKPFVKKPYAKRAEGAEGGDRPFRKGPRPEGKPFEKRERSFGDKPYRPRDGEARAEGGDRPFRKGPRPEGKPFEKREGGRSFGGDKPYRPRPAEGGERPNREFRPRDGEARAEGGDRPFRKGPRPEGKPYEKREGGRSFGGDKPYRSRPAEGGERPHREFRPRDGEARAEGGDRPFRKGPRPEGKPFEKRPYGDKPYRPRAEGSEGGERPRREFRSEEGGDRPFRKGPRPEGKPFEKRERTFGDKPRPGKPFARKPEEAAEPGERIAKRLARAGIASRRDAEELIAAGRIRVNGQVLSSPAFNVMPDDVIHLDGTEIPPIERTRLFLFHKPAGVVTTNRDPEGRKTVFDVLPAELPRLMTIGRLDINTEGLLLLTNDGGLSRVLELPATGWLRRYRVRVHGKVEQKQLDELKDGIAVDGVFYGSIEATLDREQGTNAWITIGLREGKNREVKNILGALGLEVNRLIRISYGPFQLGELPEGHVQEIKGKMLRDQLGERLVEESGANFDADIVKPFSNKPTARREERREDDAPRTPRAARLDIGEGGLIKNRKRDRERHREDVLGRLSTERPSFGDKPRFGDKPRFGDKPKFGDKPKFGDKPKFGGKKGDDREKKPFETPGARKANVWMAPGARPQGANKGDKPGFDKPRGDRPAGGAPRGGKPGPRKGRG*