ggKbase home page
Advanced Search
Search Help

CN-SCN_Mesorhizobium_20x

CN-SCN_Mesorhizobium_65_20
In projects: CN-SCN  |  SCN_92

Consensus taxonomy: Mesorhizobium  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 19.90 Longest contig: 133.13 Kbp Bin length: 3.68 Mbp GC content: 64.63 %
Contigs count: 136 Features count: 3711 rRNAs count: 0 tRNAs count: 33

Genome completeness

partial RP 41 / 55 MC: 4 BSCG 38 / 51 MC: 2 ASCG 12 / 38 MC: 1

Description

Partial 41

Displaying items 51-100 of 136 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_2371 MES20_62
Genus: Mesorhizobium (60%)
25 23131 bp 65.83 20.64 88.15
cn_combo_scaffold_2317 MES20_61
Genus: Mesorhizobium (80%)
25 23580 bp 63.38 20.53 88.16
cn_combo_scaffold_626 MES20_7
Genus: Mesorhizobium (80%)
65 66083 bp 64.49 20.06 88.19
cn_combo_scaffold_1740 MES20_39
Genus: Mesorhizobium (68.57%)
35 30645 bp 63.95 19.24 88.24
cn_combo_scaffold_937 MES20_12
Genus: Mesorhizobium (68.52%)
54 57902 bp 64.80 19.58 88.26
cn_combo_scaffold_12166 MES20_144
Genus: Mesorhizobium (57.14%)
7 5247 bp 65.41 17.78 88.34
cn_combo_scaffold_1934 MES20_47
Genus: Mesorhizobium (72%)
25 28145 bp 63.73 19.00 88.35
cn_combo_scaffold_1573 MES20_35
Genus: Mesorhizobium (51.28%)
39 32986 bp 62.66 17.71 88.50
cn_combo_scaffold_3954 MES20_93
Genus: Mesorhizobium (100%)
16 14761 bp 65.31 20.78 88.53
cn_combo_scaffold_1293 MES20_25
Genus: Mesorhizobium (72.5%)
40 39258 bp 63.56 20.04 88.73
cn_combo_scaffold_2161 MES20_55
Genus: Mesorhizobium (68.97%)
29 25284 bp 65.22 18.76 88.78
cn_combo_scaffold_1745 MES20_40
Genus: Mesorhizobium (91.67%)
36 30558 bp 64.76 20.09 88.81
cn_combo_scaffold_2096 MES20_52
Genus: Mesorhizobium (72%)
25 26167 bp 64.97 19.60 88.86
cn_combo_scaffold_9223 MES20_134
Genus: Mesorhizobium (80%)
5 6820 bp 65.63 22.52 88.90
cn_combo_scaffold_765 MES20_10
Genus: Mesorhizobium (66.43%)
140 133132 bp 64.38 19.75 88.94
cn_combo_scaffold_513 MES20_3
Genus: Mesorhizobium (67.53%)
77 76445 bp 64.61 20.75 89.17
cn_combo_scaffold_3511 MES20_86
Genus: Mesorhizobium (81.82%)
11 16336 bp 66.32 20.30 89.23
cn_combo_scaffold_11659 MES20_142
Genus: Mesorhizobium (83.33%)
6 5457 bp 66.06 18.16 89.28
cn_combo_scaffold_972 MES20_13
Genus: Mesorhizobium (84.44%)
45 49354 bp 64.22 20.24 89.28
cn_combo_scaffold_5820 MES20_114
Genus: Mesorhizobium (86.67%)
15 17715 bp 64.34 19.88 89.31
cn_combo_scaffold_2604 MES20_67
Order: Rhizobiales (85.71%)
21 21413 bp 64.41 21.27 89.40
cn_combo_scaffold_3590 MES20_87
Genus: Mesorhizobium (52.94%)
17 16018 bp 65.50 19.48 89.51
cn_combo_scaffold_426 MES20_1
Genus: Mesorhizobium (62.22%)
90 85299 bp 64.64 20.65 89.59
cn_combo_scaffold_1884 MES20_43
Genus: Mesorhizobium (73.53%)
34 28777 bp 65.56 19.64 89.59
cn_combo_scaffold_1202 MES20_21
Genus: Mesorhizobium (76.32%)
38 41424 bp 64.72 20.00 89.64
cn_combo_scaffold_8728 MES20_132
Genus: Mesorhizobium (85.71%)
7 7189 bp 65.56 19.20 89.64
cn_combo_scaffold_7951 MES20_130
Genus: Mesorhizobium (80%)
10 7794 bp 63.78 20.96 89.76
cn_combo_scaffold_1052 MES20_16
Genus: Mesorhizobium (80.43%)
46 46177 bp 64.58 21.01 89.87
cn_combo_scaffold_2981 MES20_72
Genus: Mesorhizobium (89.47%)
19 18967 bp 65.52 19.50 90.01
cn_combo_scaffold_2465 MES20_65
Genus: Mesorhizobium (80.95%)
21 22385 bp 64.19 20.04 90.07
cn_combo_scaffold_10517 MES20_137
Genus: Mesorhizobium (60%)
5 6023 bp 65.23 21.29 90.15
cn_combo_scaffold_1296 MES20_26
Genus: Mesorhizobium (87.8%)
41 39101 bp 64.33 20.01 90.30
cn_combo_scaffold_7851 MES20_128
Genus: Mesorhizobium (100%)
8 7887 bp 64.03 20.24 90.30
cn_combo_scaffold_6360 MES20_118
Genus: Mesorhizobium (61.54%)
13 9508 bp 65.07 20.68 90.30
cn_combo_scaffold_655 MES20_8
Genus: Mesorhizobium (67.14%)
70 64076 bp 65.26 20.58 90.35
cn_combo_scaffold_4169 MES20_96
Genus: Mesorhizobium (76.92%)
13 14032 bp 63.82 18.90 90.35
cn_combo_scaffold_2379 MES20_63
Genus: Mesorhizobium (56.25%)
32 23064 bp 65.33 19.20 90.36
cn_combo_scaffold_2684 MES20_69
Genus: Mesorhizobium (71.43%)
21 20909 bp 63.96 18.38 90.38
cn_combo_scaffold_1964 MES20_48
Genus: Mesorhizobium (63.64%)
33 27727 bp 64.53 19.27 90.59
cn_combo_scaffold_1422 MES20_28
Genus: Mesorhizobium (54.35%)
46 50735 bp 66.44 20.63 90.64
cn_combo_scaffold_1129 MES20_20
Genus: Mesorhizobium (88.37%)
43 43270 bp 64.30 19.88 90.69
cn_combo_scaffold_2971 MES20_74
Genus: Mesorhizobium (71.43%)
21 20565 bp 65.21 19.89 90.69
cn_combo_scaffold_1246 MES20_24
Genus: Mesorhizobium (63.04%)
46 51376 bp 63.64 18.76 90.72
cn_combo_scaffold_5822 MES20_113
Genus: Mesorhizobium (100%)
10 10279 bp 64.29 21.68 90.77
cn_combo_scaffold_9786 MES20_136
Genus: Mesorhizobium (100%)
18 8224 bp 61.88 20.96 90.80
cn_combo_scaffold_1519 MES20_34
Genus: Mesorhizobium (76.56%)
64 68771 bp 64.88 20.44 90.86
cn_combo_scaffold_1467 MES20_30
Genus: Mesorhizobium (80.56%)
36 35217 bp 64.05 18.82 90.90
cn_combo_scaffold_1568 ALPHA_220
Order: Rhizobiales (93.33%)
60 61984 bp 64.74 17.53 90.90
cn_combo_scaffold_3006 MES20_76
Genus: Mesorhizobium (91.3%)
23 25922 bp 64.73 21.19 91.01
cn_combo_scaffold_1059 MES20_17
Genus: Mesorhizobium (84.48%)
58 54276 bp 65.03 20.16 91.17
Displaying items 51-100 of 136 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.