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CN-SCN_Pelagibacterium_23x

CN-SCN_Devosia_63_23
In projects: CN-SCN

Consensus taxonomy: Devosia  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 23.30 Longest contig: 399.67 Kbp Bin length: 7.07 Mbp GC content: 62.79 %
Contigs count: 110 Features count: 6984 rRNAs count: 0 tRNAs count: 86

Genome completeness

megabin RP 45 / 55 MC: 34 BSCG 43 / 51 MC: 32 ASCG 13 / 38 MC: 11

Description

Partial double 77

Displaying items 1-50 of 110 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_89 PEL23_double_88
Species: Devosia chinhatensis (58.24%)
364 399667 bp 62.87 20.65 92.29
cn_combo_scaffold_11 PEL23_double_129
Genus: Devosia (72.41%)
348 370556 bp 62.94 25.75 91.58
cn_combo_scaffold_82 PEL23_double_89
Species: Devosia chinhatensis (72.96%)
233 229251 bp 61.84 19.27 90.49
cn_combo_scaffold_39 PEL23_double_1
Genus: Devosia (86.52%)
230 236879 bp 62.19 25.11 90.79
cn_combo_scaffold_221 PEL23_double_132b
Species: Devosia chinhatensis (50.83%)
181 196422 bp 61.64 20.59 91.14
cn_combo_scaffold_105 PEL23_double_3
Genus: Devosia (90%)
180 169870 bp 63.94 27.69 90.78
cn_combo_scaffold_123 PEL23_double_91
Species: Devosia chinhatensis (52.78%)
180 159746 bp 60.90 19.77 85.23
cn_combo_scaffold_108 PEL23_double_4
Genus: Devosia (76.79%)
168 171212 bp 63.14 25.61 92.14
cn_combo_scaffold_176 PEL23_double_11
Genus: Devosia (86.14%)
166 167898 bp 63.06 26.51 90.55
cn_combo_scaffold_308 PEL23_double_94
Species: Devosia chinhatensis (69.7%)
165 148194 bp 62.93 20.72 90.87
cn_combo_scaffold_87 PEL23_double_130
Genus: Devosia (83.44%)
163 180708 bp 62.72 25.21 92.76
cn_combo_scaffold_134 PEL23_double_90
Species: Devosia chinhatensis (54.6%)
163 163874 bp 62.87 20.83 90.79
cn_combo_scaffold_137 PEL23_double_92
Species: Devosia chinhatensis (67.9%)
162 153978 bp 62.55 21.13 90.90
cn_combo_scaffold_138 PEL23_double_93
Genus: Devosia (60%)
150 153229 bp 61.96 19.59 92.91
cn_combo_scaffold_440 PEL23_double_134
Order: Rhizobiales (60.14%)
148 160685 bp 61.88 19.76 90.36
cn_combo_scaffold_198 PEL23_double_12
Genus: Devosia (74.82%)
139 129508 bp 62.78 24.51 88.82
cn_combo_scaffold_128 PEL23_double_6
Genus: Devosia (79.56%)
137 157127 bp 64.03 26.47 89.67
cn_combo_scaffold_200 PEL23_double_95
Species: Devosia chinhatensis (75.2%)
125 128525 bp 61.50 19.72 90.59
cn_combo_scaffold_201 PEL23_double_131
Genus: Devosia (69.42%)
121 128360 bp 63.43 26.66 91.13
cn_combo_scaffold_631 PEL23_double_24
Species: Devosia chinhatensis (50.86%)
116 118994 bp 64.28 28.60 90.82
cn_combo_scaffold_229 PEL23_double_96
Species: Devosia chinhatensis (75.65%)
115 120319 bp 63.36 20.99 92.30
cn_combo_scaffold_251 PEL23_double_97
Species: Devosia chinhatensis (68.81%)
109 116856 bp 62.54 20.58 90.52
cn_combo_scaffold_300 PEL23_double_98
Species: Devosia chinhatensis (60.38%)
106 105015 bp 62.52 21.11 90.82
cn_combo_scaffold_333 PEL23_double_18
Species: Devosia chinhatensis (58.95%)
95 99593 bp 64.61 27.16 88.85
cn_combo_scaffold_505 PEL23_double_99
Species: Devosia chinhatensis (65.26%)
95 101847 bp 62.32 20.07 91.26
cn_combo_scaffold_380 PEL23_double_100
Genus: Devosia (87.36%)
87 92813 bp 62.76 21.06 92.19
cn_combo_scaffold_412 PEL23_double_20
Species: Devosia chinhatensis (50.62%)
81 86665 bp 62.78 25.20 93.35
cn_combo_scaffold_502 PEL23_double_21
Genus: Devosia (79.75%)
79 77146 bp 64.39 27.11 87.13
cn_combo_scaffold_529 PEL23_double_135
Genus: Devosia (77.63%)
76 74473 bp 65.40 28.18 90.61
cn_combo_scaffold_908 PEL23_double_141
Species: Devosia chinhatensis (67.12%)
73 78054 bp 62.44 20.51 90.84
cn_combo_scaffold_612 PEL23_double_23
Genus: Devosia (81.69%)
71 67086 bp 63.43 26.38 90.52
cn_combo_scaffold_654 PEL23_double_137
Species: Devosia chinhatensis (68.12%)
69 67138 bp 61.45 21.32 90.99
cn_combo_scaffold_606 PEL23_double_136
Species: Devosia chinhatensis (63.64%)
66 67629 bp 62.38 20.16 91.63
cn_combo_scaffold_694 PEL23_double_138
Genus: Devosia (90.91%)
66 62022 bp 64.79 28.59 88.89
cn_combo_scaffold_963 PEL23_double_103
Species: Devosia chinhatensis (61.9%)
63 50113 bp 61.72 19.91 87.30
cn_combo_scaffold_430 PEL23_double_133
Genus: Devosia (83.61%)
61 84831 bp 62.28 25.55 87.40
cn_combo_scaffold_1709 PEL23_double_147
Genus: Devosia (53.33%)
60 53577 bp 63.85 26.12 88.89
cn_combo_scaffold_1234 PEL23_double_36
Species: Devosia chinhatensis (53.33%)
60 71821 bp 64.32 25.94 89.48
cn_combo_scaffold_724 PEL23_double_101
Species: Devosia chinhatensis (71.19%)
59 60488 bp 62.37 20.74 89.85
cn_combo_scaffold_760 PEL23_double_139
Genus: Devosia (68.97%)
58 58911 bp 63.59 20.35 91.45
cn_combo_scaffold_870 PEL23_double_140
Species: Devosia chinhatensis (61.11%)
54 54141 bp 62.47 20.64 90.01
cn_combo_scaffold_891 PEL23_double_30
Genus: Devosia (59.26%)
54 54525 bp 63.79 29.47 87.62
cn_combo_scaffold_2241 PEL23_double_102
Species: Devosia chinhatensis (62.96%)
54 57014 bp 63.51 21.11 90.11
cn_combo_scaffold_876 PEL23_double_29
Species: Devosia chinhatensis (70.59%)
51 53954 bp 65.47 27.97 91.33
cn_combo_scaffold_966 PEL23_double_157
Order: Rhizobiales (60%)
50 49786 bp 61.83 24.46 88.36
cn_combo_scaffold_769 PEL23_double_27
Genus: Devosia (90%)
50 58175 bp 63.25 26.64 90.48
cn_combo_scaffold_1110 PEL23_double_142
Order: Rhizobiales (75%)
48 44122 bp 60.39 21.98 85.90
cn_combo_scaffold_871 PEL23_double_28
Species: Devosia chinhatensis (65.22%)
46 54133 bp 62.57 24.50 87.33
cn_combo_scaffold_1012 PEL23_double_32
Genus: Devosia (91.11%)
45 47497 bp 64.46 27.37 93.19
cn_combo_scaffold_1060 PEL23_double_33
Species: Devosia chinhatensis (50%)
44 46034 bp 61.63 25.67 88.07
Displaying items 1-50 of 110 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.